ID R6VIT9_9CLOT Unreviewed; 750 AA.
AC R6VIT9;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=Putative stage V sporulation protein D {ECO:0000313|EMBL:CDC82387.1};
GN ORFNames=BN818_01650 {ECO:0000313|EMBL:CDC82387.1};
OS Clostridium sp. CAG:964.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=1262848 {ECO:0000313|EMBL:CDC82387.1, ECO:0000313|Proteomes:UP000018136};
RN [1] {ECO:0000313|EMBL:CDC82387.1, ECO:0000313|Proteomes:UP000018136}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:964 {ECO:0000313|Proteomes:UP000018136};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the transpeptidase family.
CC {ECO:0000256|ARBA:ARBA00007171}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDC82387.1}.
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DR EMBL; CBFZ010000088; CDC82387.1; -; Genomic_DNA.
DR AlphaFoldDB; R6VIT9; -.
DR STRING; 1262848.BN818_01650; -.
DR Proteomes; UP000018136; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0008658; F:penicillin binding; IEA:InterPro.
DR CDD; cd06576; PASTA_Pbp2x-like_1; 1.
DR CDD; cd06575; PASTA_Pbp2x-like_2; 1.
DR Gene3D; 3.30.10.20; -; 1.
DR Gene3D; 3.40.710.10; DD-peptidase/beta-lactamase superfamily; 1.
DR Gene3D; 3.90.1310.10; Penicillin-binding protein 2a (Domain 2); 1.
DR InterPro; IPR012338; Beta-lactam/transpept-like.
DR InterPro; IPR005543; PASTA_dom.
DR InterPro; IPR005311; PBP_dimer.
DR InterPro; IPR036138; PBP_dimer_sf.
DR InterPro; IPR001460; PCN-bd_Tpept.
DR PANTHER; PTHR30627; PEPTIDOGLYCAN D,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30627:SF1; PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; 1.
DR Pfam; PF03793; PASTA; 2.
DR Pfam; PF03717; PBP_dimer; 1.
DR Pfam; PF00905; Transpeptidase; 1.
DR SMART; SM00740; PASTA; 2.
DR SUPFAM; SSF56601; beta-lactamase/transpeptidase-like; 1.
DR SUPFAM; SSF56519; Penicillin binding protein dimerisation domain; 1.
DR SUPFAM; SSF54184; Penicillin-binding protein 2x (pbp-2x), c-terminal domain; 2.
DR PROSITE; PS51178; PASTA; 2.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000018136};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 17..38
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 618..673
FT /note="PASTA"
FT /evidence="ECO:0000259|PROSITE:PS51178"
FT DOMAIN 677..741
FT /note="PASTA"
FT /evidence="ECO:0000259|PROSITE:PS51178"
SQ SEQUENCE 750 AA; 81867 MW; 2DF35586DDA29BD7 CRC64;
MANIGSNRTI ISRSKKWLVV LLLVGFGLAI GRLFYFSIIK GDELQKKAYS LQLRDTTISA
KRGSIYDTNG KTLAQSATVW QVVLAPAYFK TDEQRTYVAQ KLAEILDLNQ NDVYEKTKEN
NYYSVVKRKV ETTEKEKVLK LSKELAKKYN LGNVIELIED YKRYYPYGDF ASTIIGFTGM
DGVGREGIEY QYDTQLTGVP GRVITAKDVH GTEMPYKYEQ KIDAQDGNNI TLTIDETIQH
IMEKYLQQGI KQHKVQDRAV AIMMEVKTGA ILGMAVEGGY DLNDPFTIAD SSTQKEIDKL
PNSEKEAAEV EALQKQWRNK AVADTYYPGS VFKVITSCMG WSDGVITDSS TYTCTGSYVP
FEGADAIHCH NTAGHGTQTY KQALSNSCNP AFMMIGQAVG AEKFWEYYQA FGFSEKTGID
LPGEQSDIFF GDGSGKMQPM DLAVASFGQN FAITPIQMVT AIASVGNGGK LMQPYIVKEI
TDSDGNVVES KTPIVKRQVV SEEVTKKVID AMEENATNGS AKNGYVAGYK VAGKTGTSEK
KIYHNDGSQE YIASFCGFAP ADDPQVCLLV YFDDPVGDSY YGSAVAAPVF ANIMSEVLPY
LNVEAEYTEE EIAQMDTTAE NYVGKSISEA ESLVSSGGFT PVVMGSGDTV ISQVPTAQSR
LPQQGTVVLY TDEESMNDDV VEVPDLTNMT VAQANSTAAM YNLNISVVGS NADGEGISYS
QGIKAGSKVK SGTVISVNFE QDSNYGSGVM
//
