ID R7BCI3_9FIRM Unreviewed; 424 AA.
AC R7BCI3;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE SubName: Full=Diaminopimelate decarboxylase {ECO:0000313|EMBL:CDD63022.1};
GN ORFNames=BN614_01475 {ECO:0000313|EMBL:CDD63022.1};
OS Firmicutes bacterium CAG:341.
OC Bacteria; Bacillota.
OX NCBI_TaxID=1263019 {ECO:0000313|EMBL:CDD63022.1, ECO:0000313|Proteomes:UP000018400};
RN [1] {ECO:0000313|EMBL:CDD63022.1, ECO:0000313|Proteomes:UP000018400}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:341 {ECO:0000313|Proteomes:UP000018400};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDD63022.1}.
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DR EMBL; CBHK010000021; CDD63022.1; -; Genomic_DNA.
DR AlphaFoldDB; R7BCI3; -.
DR STRING; 1263019.BN614_01475; -.
DR Proteomes; UP000018400; Unassembled WGS sequence.
DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IEA:InterPro.
DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:InterPro.
DR CDD; cd06828; PLPDE_III_DapDC; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR002986; DAP_deCOOHase_LysA.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01181; DAPDCRBXLASE.
DR PRINTS; PR01179; ODADCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50}.
FT DOMAIN 31..278
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 281..369
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 342
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 55
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 424 AA; 47755 MW; FC97D2D9DFF8241D CRC64;
MAKVPFVTKE KVEEIASKYP TPFHLYDEKG IRENVKNLKK AFSWNKGYKE YFAVKATPNP
FLINILREYG CGCDCSSKTE LMMAKTIGAV GDDIMFSSND TPIDEFKYCN KLGGIINLDD
ITHIEAVEKA CGKLPKKMSC RYNPGGIFKI SNDIMDNPGD AKYGMTTEQI YEAFKILKEK
GVEEFGIHSF LCSNTVTNEY YPMLAKLLFE LAADLKEKLG VHITFINLSG GIGIPYKPDQ
EPNDIFVIGE GVRKAYEEVL IPADMGDVSI FTELGRYMLG PYGGLVTKAI NEKHTHKEYI
GVDACAVNLM RPAIYGAYHH ITVLGKENEP NDHKYDVTGS LCENCDKFAV DRMLPKIDMG
DYIFIHDAGA HGFSMGYNYN GKLKSSEILL KEDGSFKLIR RAETPKDYFA TFDCFDFYDE
LIKE
//
