ID R7FEF4_9FIRM Unreviewed; 950 AA.
AC R7FEF4;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE SubName: Full=Pectate lyase {ECO:0000313|EMBL:CDE13046.1};
GN ORFNames=BN611_00168 {ECO:0000313|EMBL:CDE13046.1};
OS Ruminococcus sp. CAG:330.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
OC Ruminococcus.
OX NCBI_TaxID=1262954 {ECO:0000313|EMBL:CDE13046.1, ECO:0000313|Proteomes:UP000018377};
RN [1] {ECO:0000313|EMBL:CDE13046.1, ECO:0000313|Proteomes:UP000018377}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:330 {ECO:0000313|Proteomes:UP000018377};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|RuleBase:RU361173}.
CC -!- SIMILARITY: Belongs to the polysaccharide lyase 1 family.
CC {ECO:0000256|RuleBase:RU361173}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDE13046.1}.
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DR EMBL; CBIH010000132; CDE13046.1; -; Genomic_DNA.
DR AlphaFoldDB; R7FEF4; -.
DR STRING; 1262954.BN611_00168; -.
DR Proteomes; UP000018377; Unassembled WGS sequence.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0004553; F:hydrolase activity, hydrolyzing O-glycosyl compounds; IEA:InterPro.
DR GO; GO:0030570; F:pectate lyase activity; IEA:InterPro.
DR GO; GO:0000272; P:polysaccharide catabolic process; IEA:UniProtKB-KW.
DR CDD; cd14256; Dockerin_I; 1.
DR CDD; cd00161; RICIN; 2.
DR Gene3D; 2.80.10.50; -; 5.
DR Gene3D; 1.10.1330.10; Dockerin domain; 1.
DR Gene3D; 2.160.20.10; Single-stranded right-handed beta-helix, Pectin lyase-like; 1.
DR InterPro; IPR002105; Dockerin_1_rpt.
DR InterPro; IPR016134; Dockerin_dom.
DR InterPro; IPR036439; Dockerin_dom_sf.
DR InterPro; IPR002022; Pec_lyase.
DR InterPro; IPR012334; Pectin_lyas_fold.
DR InterPro; IPR011050; Pectin_lyase_fold/virulence.
DR InterPro; IPR045032; PEL.
DR InterPro; IPR035992; Ricin_B-like_lectins.
DR InterPro; IPR000772; Ricin_B_lectin.
DR PANTHER; PTHR31683; PECTATE LYASE 18-RELATED; 1.
DR PANTHER; PTHR31683:SF187; PECTATE LYASE 18-RELATED; 1.
DR Pfam; PF00404; Dockerin_1; 1.
DR Pfam; PF00544; Pectate_lyase_4; 1.
DR Pfam; PF14200; RicinB_lectin_2; 5.
DR SMART; SM00656; Amb_all; 1.
DR SMART; SM00458; RICIN; 3.
DR SUPFAM; SSF51126; Pectin lyase-like; 1.
DR SUPFAM; SSF50370; Ricin B-like lectins; 3.
DR SUPFAM; SSF63446; Type I dockerin domain; 1.
DR PROSITE; PS51766; DOCKERIN; 1.
DR PROSITE; PS50231; RICIN_B_LECTIN; 2.
PE 3: Inferred from homology;
KW Carbohydrate metabolism {ECO:0000256|RuleBase:RU361173};
KW Lyase {ECO:0000256|ARBA:ARBA00023239, ECO:0000256|RuleBase:RU361173};
KW Polysaccharide degradation {ECO:0000256|RuleBase:RU361173};
KW Reference proteome {ECO:0000313|Proteomes:UP000018377};
KW Secreted {ECO:0000256|RuleBase:RU361173}.
FT DOMAIN 888..950
FT /note="Dockerin"
FT /evidence="ECO:0000259|PROSITE:PS51766"
SQ SEQUENCE 950 AA; 102679 MW; 7ABDEAE613F71EE2 CRC64;
MKHWVRMRQA LLLSLVLLTA WMLPLFRWDG AVLSASAVST DYPAQLMQLA DKTNAKVLTE
TGTSDGAAIS LQAQGSDLSA SWRFDRVGKD GNGTFFKLVN AQSGRLLTPR NYRVSAGTDV
ILYGSESAQS QHWYVIPVAQ DHLGNDLYYK IVNYSDTALA LTAGASGMTL AKYTGADSQL
WLLNADGLQG FAGYCFDDNT GNIKAGDIGG LFGEIVEVST FADLKKYATS DTPYTIVVTA
NLSVTTLQKD SSGRNYCPDG RIYVHSNKTI IGSYAAHTMY NVQFCTSSNS GTGNNLILKN
FELQHDAESN GNDSIVVYLG SGQNLWVDHC TFVGHSDYNT ASTGLPDWDK FLACCYDADY
TTVSDCSFGL HEYGVILGYP ADDENSYQTY NNYPRMSIIS NRFEKTLTRG PGLMRYGYFH
SLNNYVKTFS MAYTVHTASK IFAENCYYED GGNVICDWNT VTYPGSYAES GSKSVNCKRT
TIEGYAQDCT WRPTSNYNTV SRTADEAKTY CQNYSGCQDN RNNMMYLRYA AAGVPSAGYT
EAPSAPQAET FAEGSTYRIR NVNSGLYLQV AGAAAQSGAN VQQWGTDGTS VHDIWKLCSA
GEGYYYLASV VGDGGTYVLD VAGKKTANGT NLDIYPYNGG SNQQFMLTKN GDGSYLIRTG
ISGGNSAVEV ADASTTSGAN VQQWECNGAT CQNWTLEPVA DPGCAMDTSV IYTFENAGSG
LVMDIADGKM ADNTNVQQWA SNGLDCQKWT LRAFGSGNYY WIRSQQDSGY ALKADGSKNG
GNLAIAVWSN KDSAQLFRFT KNLDGSYSIL THASGDSCYV EVAGAATANG ANVQQWEPTN
NDCQRWQAKT ETTTTTTKVT TTTATTTTTT TAKTTAATKA TAATTTEPPA ISGDVNADGK
ANLTDLVLLQ KWLLGTSETK LANWQVGDLN ADGVLNGFDL CLLREKLLVG
//
