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Database: UniProt
Entry: S3CTI9_OPHP1
LinkDB: S3CTI9_OPHP1
Original site: S3CTI9_OPHP1 
ID   S3CTI9_OPHP1            Unreviewed;      1480 AA.
AC   S3CTI9;
DT   18-SEP-2013, integrated into UniProtKB/TrEMBL.
DT   18-SEP-2013, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN   ORFNames=F503_05108 {ECO:0000313|EMBL:EPE10013.1};
OS   Ophiostoma piceae (strain UAMH 11346) (Sap stain fungus).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Ophiostoma.
OX   NCBI_TaxID=1262450 {ECO:0000313|EMBL:EPE10013.1, ECO:0000313|Proteomes:UP000016923};
RN   [1] {ECO:0000313|EMBL:EPE10013.1, ECO:0000313|Proteomes:UP000016923}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=UAMH 11346 {ECO:0000313|EMBL:EPE10013.1,
RC   ECO:0000313|Proteomes:UP000016923};
RX   PubMed=23725015; DOI=10.1186/1471-2164-14-373;
RA   Haridas S., Wang Y., Lim L., Massoumi Alamouti S., Jackman S., Docking R.,
RA   Robertson G., Birol I., Bohlmann J., Breuil C.;
RT   "The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and
RT   a comparison with the bark beetle-associated pine pathogen Grosmannia
RT   clavigera.";
RL   BMC Genomics 14:373-373(2013).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|RuleBase:RU004279}.
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DR   EMBL; KE148146; EPE10013.1; -; Genomic_DNA.
DR   STRING; 1262450.S3CTI9; -.
DR   VEuPathDB; FungiDB:F503_05108; -.
DR   eggNOG; KOG0261; Eukaryota.
DR   HOGENOM; CLU_000487_3_0_1; -.
DR   OMA; AVCPPYN; -.
DR   OrthoDB; 169836at2759; -.
DR   Proteomes; UP000016923; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR   CDD; cd02583; RNAP_III_RPC1_N; 1.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.150.390; -; 1.
DR   Gene3D; 2.40.40.20; -; 1.
DR   Gene3D; 6.10.250.2940; -; 1.
DR   Gene3D; 6.20.50.80; -; 1.
DR   Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR   Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR035698; RNAP_III_Rpc1_C.
DR   InterPro; IPR035697; RNAP_III_RPC1_N.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000016923};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT   DOMAIN          261..564
FT                   /note="RNA polymerase N-terminal"
FT                   /evidence="ECO:0000259|SMART:SM00663"
SQ   SEQUENCE   1480 AA;  164516 MW;  AFC30B9AFC1FCDB4 CRC64;
     MSAARPHGPV KEQMVDQLPK RFKGIKFGIQ SNQDIVNQAV LEVSDQMLYD IENNRAPYKH
     GPLDPRLGTS SKTGKCATCM QPLQLCTGHF GHIRLPLPVF HIGYLRFIQM ILQNICKDCG
     HVLLVESDRR SFLKELRRPG IDNLRRTGIS KRINETCRKC KICPYCGGTN GVIKKLGTLK
     LAHDRFAAYN RSTAMKKQMP KGKLEFDQSF VSAKKYVPDL EKHVRKALED LNPLRVLNLF
     KKVSPSDCEL LGLDPSEGRP EMFIWQYLPA PPICIRPSVA QDSSSTEDDL TTKLAEIVHL
     SGLIRGALAK GTAVATVMEL WEYLQQQIAM YVNSEVPGLS QPGFGKTIRG FCQRLKGKQG
     RFRGNLSGKR VDFSGRTVIS PDPNLSIDEV AVPILVAKNL TYPELANHVN IEKLRSLILT
     GPTEWPGAMG VHKKADGGYK IDLKYADRRQ VARDLSYGDK VDRHLEDGDI VLFNRQPSLH
     KLSIMSHLVK VRHWRTFRLN ECVCGPYNAD FDGDEMNLHV PQTEEARAEA TTLMNVKHNL
     ITPKNGEPII AANQDFITAA YLISSKDMFF SRQAFAYICM HMTEAKVPLD IPPPAILKPQ
     ALWTGKQIFN MLMRPNKETQ VFVNLDAKCR DYQPRPGQCP DMCPNDGWLV VRNSEVMCGR
     MDKSTVGTGK KDSIFYVILR DFGPDAAVVA MNRLAKLCAR FLGNFGFSIG VIDVFPTDEL
     NDKKEDLVTE ANRKCDALIE TFKAGKLEKA PGCNPEQTLE NAISGILSKV RQQAGEKCEE
     TLSRHNAPLT MASSGSKGSA INVAQMVACV GQQIIGGERV PDGFMDRSLP HFQKNTRQPA
     SKGFVKNSFY SGLVPTEFLF HAISGREGLV DTAVKTAETG YMSRRLMKCL EDLSTQYDNT
     VRTSSGGIVQ FQFGADRLDP VNMEGAAVPV HFDRTWTHAE SITFDNKDPT LLPDEIMVIC
     EEILDRERAK NARHDLVTDE VLDYNDQTDR HLDLLEGARM FIETVAEYVR KRSNKLANAR
     SLAGLQISSN SEGGDALADP AKLQRVDRVA KVSRRTLERF LNLCIDKYRL AHVEPGHAVG
     AVGAQSIGEP GTQMTLKTFH FAGVAGMSLT QGVPRIKEII NASKKISTPV IKCPLQNTRQ
     IEAARIVKGR IEKTYISDIL QYIEDEWGTF AGRVVLKIDR QALMDMHLEI GLGEIAQAIC
     RQKKMKVDEK TIELDYSRDT ITLVVPNDYV DVAAQKRAVK ARVTAGLTGP MSTVSKSNTT
     TGNEETADLL LRVNYLRRML PTVPISGYAD ATRAIIQTSE QNENTVFVEG YGLRDCMITE
     GVIGTRTTTN SILECRDVLG IEAARSSIAV EIGEVMGGMG IDPRHMELLA DVMTYKGEVL
     GITRFGMSKM RDSVLHLASF EKTPDHLFDA AAGMKTDRIE GVSECIIMGQ TMTIGTGAFS
     MVRRLGIAPQ QLNPRRTCFE DAWQANHGPV RRMRPAAVMA
//
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