ID S3CTI9_OPHP1 Unreviewed; 1480 AA.
AC S3CTI9;
DT 18-SEP-2013, integrated into UniProtKB/TrEMBL.
DT 18-SEP-2013, sequence version 1.
DT 24-JAN-2024, entry version 43.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN ORFNames=F503_05108 {ECO:0000313|EMBL:EPE10013.1};
OS Ophiostoma piceae (strain UAMH 11346) (Sap stain fungus).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Ophiostoma.
OX NCBI_TaxID=1262450 {ECO:0000313|EMBL:EPE10013.1, ECO:0000313|Proteomes:UP000016923};
RN [1] {ECO:0000313|EMBL:EPE10013.1, ECO:0000313|Proteomes:UP000016923}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=UAMH 11346 {ECO:0000313|EMBL:EPE10013.1,
RC ECO:0000313|Proteomes:UP000016923};
RX PubMed=23725015; DOI=10.1186/1471-2164-14-373;
RA Haridas S., Wang Y., Lim L., Massoumi Alamouti S., Jackman S., Docking R.,
RA Robertson G., Birol I., Bohlmann J., Breuil C.;
RT "The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and
RT a comparison with the bark beetle-associated pine pathogen Grosmannia
RT clavigera.";
RL BMC Genomics 14:373-373(2013).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|RuleBase:RU004279}.
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DR EMBL; KE148146; EPE10013.1; -; Genomic_DNA.
DR STRING; 1262450.S3CTI9; -.
DR VEuPathDB; FungiDB:F503_05108; -.
DR eggNOG; KOG0261; Eukaryota.
DR HOGENOM; CLU_000487_3_0_1; -.
DR OMA; AVCPPYN; -.
DR OrthoDB; 169836at2759; -.
DR Proteomes; UP000016923; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000016923};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT DOMAIN 261..564
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
SQ SEQUENCE 1480 AA; 164516 MW; AFC30B9AFC1FCDB4 CRC64;
MSAARPHGPV KEQMVDQLPK RFKGIKFGIQ SNQDIVNQAV LEVSDQMLYD IENNRAPYKH
GPLDPRLGTS SKTGKCATCM QPLQLCTGHF GHIRLPLPVF HIGYLRFIQM ILQNICKDCG
HVLLVESDRR SFLKELRRPG IDNLRRTGIS KRINETCRKC KICPYCGGTN GVIKKLGTLK
LAHDRFAAYN RSTAMKKQMP KGKLEFDQSF VSAKKYVPDL EKHVRKALED LNPLRVLNLF
KKVSPSDCEL LGLDPSEGRP EMFIWQYLPA PPICIRPSVA QDSSSTEDDL TTKLAEIVHL
SGLIRGALAK GTAVATVMEL WEYLQQQIAM YVNSEVPGLS QPGFGKTIRG FCQRLKGKQG
RFRGNLSGKR VDFSGRTVIS PDPNLSIDEV AVPILVAKNL TYPELANHVN IEKLRSLILT
GPTEWPGAMG VHKKADGGYK IDLKYADRRQ VARDLSYGDK VDRHLEDGDI VLFNRQPSLH
KLSIMSHLVK VRHWRTFRLN ECVCGPYNAD FDGDEMNLHV PQTEEARAEA TTLMNVKHNL
ITPKNGEPII AANQDFITAA YLISSKDMFF SRQAFAYICM HMTEAKVPLD IPPPAILKPQ
ALWTGKQIFN MLMRPNKETQ VFVNLDAKCR DYQPRPGQCP DMCPNDGWLV VRNSEVMCGR
MDKSTVGTGK KDSIFYVILR DFGPDAAVVA MNRLAKLCAR FLGNFGFSIG VIDVFPTDEL
NDKKEDLVTE ANRKCDALIE TFKAGKLEKA PGCNPEQTLE NAISGILSKV RQQAGEKCEE
TLSRHNAPLT MASSGSKGSA INVAQMVACV GQQIIGGERV PDGFMDRSLP HFQKNTRQPA
SKGFVKNSFY SGLVPTEFLF HAISGREGLV DTAVKTAETG YMSRRLMKCL EDLSTQYDNT
VRTSSGGIVQ FQFGADRLDP VNMEGAAVPV HFDRTWTHAE SITFDNKDPT LLPDEIMVIC
EEILDRERAK NARHDLVTDE VLDYNDQTDR HLDLLEGARM FIETVAEYVR KRSNKLANAR
SLAGLQISSN SEGGDALADP AKLQRVDRVA KVSRRTLERF LNLCIDKYRL AHVEPGHAVG
AVGAQSIGEP GTQMTLKTFH FAGVAGMSLT QGVPRIKEII NASKKISTPV IKCPLQNTRQ
IEAARIVKGR IEKTYISDIL QYIEDEWGTF AGRVVLKIDR QALMDMHLEI GLGEIAQAIC
RQKKMKVDEK TIELDYSRDT ITLVVPNDYV DVAAQKRAVK ARVTAGLTGP MSTVSKSNTT
TGNEETADLL LRVNYLRRML PTVPISGYAD ATRAIIQTSE QNENTVFVEG YGLRDCMITE
GVIGTRTTTN SILECRDVLG IEAARSSIAV EIGEVMGGMG IDPRHMELLA DVMTYKGEVL
GITRFGMSKM RDSVLHLASF EKTPDHLFDA AAGMKTDRIE GVSECIIMGQ TMTIGTGAFS
MVRRLGIAPQ QLNPRRTCFE DAWQANHGPV RRMRPAAVMA
//