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Database: UniProt
Entry: S5RQ12_9PROT
LinkDB: S5RQ12_9PROT
Original site: S5RQ12_9PROT 
ID   S5RQ12_9PROT            Unreviewed;       248 AA.
AC   S5RQ12;
DT   16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT   16-OCT-2013, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   SubName: Full=tRNA/rRNA methyltransferase {ECO:0000313|EMBL:AGS06973.1};
GN   Name=rlmB {ECO:0000313|EMBL:AGS06973.1};
GN   ORFNames=SSDC_01425 {ECO:0000313|EMBL:AGS06973.1};
OS   Candidatus Profftella armatura.
OC   Bacteria; Pseudomonadota; Betaproteobacteria; Candidatus Profftella.
OX   NCBI_TaxID=669502 {ECO:0000313|EMBL:AGS06973.1, ECO:0000313|Proteomes:UP000015216};
RN   [1] {ECO:0000313|EMBL:AGS06973.1, ECO:0000313|Proteomes:UP000015216}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DC {ECO:0000313|EMBL:AGS06973.1,
RC   ECO:0000313|Proteomes:UP000015216};
RX   PubMed=23850282; DOI=10.1016/j.cub.2013.06.027;
RA   Nakabachi A., Ueoka R., Oshima K., Teta R., Mangoni A., Gurgui M.,
RA   Oldham N.J., van Echten-Deckert G., Okamura K., Yamamoto K., Inoue H.,
RA   Ohkuma M., Hongoh Y., Miyagishima S.Y., Hattori M., Piel J., Fukatsu T.;
RT   "Defensive bacteriome symbiont with a drastically reduced genome.";
RL   Curr. Biol. 23:1478-1484(2013).
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DR   EMBL; CP003468; AGS06973.1; -; Genomic_DNA.
DR   AlphaFoldDB; S5RQ12; -.
DR   STRING; 669502.SSDC_01425; -.
DR   KEGG; ssdc:SSDC_01425; -.
DR   PATRIC; fig|669502.6.peg.277; -.
DR   eggNOG; COG0566; Bacteria.
DR   HOGENOM; CLU_021322_0_1_4; -.
DR   Proteomes; UP000015216; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR   GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd18103; SpoU-like_RlmB; 1.
DR   Gene3D; 3.30.1330.30; -; 1.
DR   Gene3D; 3.40.1280.10; -; 1.
DR   InterPro; IPR029028; Alpha/beta_knot_MTases.
DR   InterPro; IPR029064; Ribosomal_eL30-like_sf.
DR   InterPro; IPR004441; rRNA_MeTrfase_TrmH.
DR   InterPro; IPR001537; SpoU_MeTrfase.
DR   InterPro; IPR013123; SpoU_subst-bd.
DR   InterPro; IPR029026; tRNA_m1G_MTases_N.
DR   NCBIfam; TIGR00186; rRNA_methyl_3; 1.
DR   PANTHER; PTHR46429; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR   PANTHER; PTHR46429:SF1; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR   Pfam; PF00588; SpoU_methylase; 1.
DR   Pfam; PF08032; SpoU_sub_bind; 1.
DR   SMART; SM00967; SpoU_sub_bind; 1.
DR   SUPFAM; SSF75217; alpha/beta knot; 1.
DR   SUPFAM; SSF55315; L30e-like; 1.
PE   4: Predicted;
KW   Methyltransferase {ECO:0000256|ARBA:ARBA00022603,
KW   ECO:0000313|EMBL:AGS06973.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000015216};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000313|EMBL:AGS06973.1}.
FT   DOMAIN          7..83
FT                   /note="RNA 2-O ribose methyltransferase substrate binding"
FT                   /evidence="ECO:0000259|SMART:SM00967"
SQ   SEQUENCE   248 AA;  27474 MW;  234DA017E481E4D9 CRC64;
     MSIKEKIIFG FHAINSKIIQ NSSSIKTLYI DISRNDNRMK NIIKNAKLAN IHIISINNKK
     LFHIAKTHNH QGVVAKIKEF SFKKNLYELL DSIKEPLLLL ILDEITDPHN LGACLRVADG
     AGVHAIISTK NNSVGLNATV AKVSSGAIET IPFFTVTNLS NTLCKLKERN IYLIGASNKS
     KKSLYNTNFL DSSAIIMGSE KKGLRHLTKK NCDILINIPM SGLIESLNVS VAAGIILFEA
     RRQRIINI
//
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