ID S5RQ12_9PROT Unreviewed; 248 AA.
AC S5RQ12;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 24-JAN-2024, entry version 43.
DE SubName: Full=tRNA/rRNA methyltransferase {ECO:0000313|EMBL:AGS06973.1};
GN Name=rlmB {ECO:0000313|EMBL:AGS06973.1};
GN ORFNames=SSDC_01425 {ECO:0000313|EMBL:AGS06973.1};
OS Candidatus Profftella armatura.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Candidatus Profftella.
OX NCBI_TaxID=669502 {ECO:0000313|EMBL:AGS06973.1, ECO:0000313|Proteomes:UP000015216};
RN [1] {ECO:0000313|EMBL:AGS06973.1, ECO:0000313|Proteomes:UP000015216}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DC {ECO:0000313|EMBL:AGS06973.1,
RC ECO:0000313|Proteomes:UP000015216};
RX PubMed=23850282; DOI=10.1016/j.cub.2013.06.027;
RA Nakabachi A., Ueoka R., Oshima K., Teta R., Mangoni A., Gurgui M.,
RA Oldham N.J., van Echten-Deckert G., Okamura K., Yamamoto K., Inoue H.,
RA Ohkuma M., Hongoh Y., Miyagishima S.Y., Hattori M., Piel J., Fukatsu T.;
RT "Defensive bacteriome symbiont with a drastically reduced genome.";
RL Curr. Biol. 23:1478-1484(2013).
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DR EMBL; CP003468; AGS06973.1; -; Genomic_DNA.
DR AlphaFoldDB; S5RQ12; -.
DR STRING; 669502.SSDC_01425; -.
DR KEGG; ssdc:SSDC_01425; -.
DR PATRIC; fig|669502.6.peg.277; -.
DR eggNOG; COG0566; Bacteria.
DR HOGENOM; CLU_021322_0_1_4; -.
DR Proteomes; UP000015216; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd18103; SpoU-like_RlmB; 1.
DR Gene3D; 3.30.1330.30; -; 1.
DR Gene3D; 3.40.1280.10; -; 1.
DR InterPro; IPR029028; Alpha/beta_knot_MTases.
DR InterPro; IPR029064; Ribosomal_eL30-like_sf.
DR InterPro; IPR004441; rRNA_MeTrfase_TrmH.
DR InterPro; IPR001537; SpoU_MeTrfase.
DR InterPro; IPR013123; SpoU_subst-bd.
DR InterPro; IPR029026; tRNA_m1G_MTases_N.
DR NCBIfam; TIGR00186; rRNA_methyl_3; 1.
DR PANTHER; PTHR46429; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR PANTHER; PTHR46429:SF1; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR Pfam; PF00588; SpoU_methylase; 1.
DR Pfam; PF08032; SpoU_sub_bind; 1.
DR SMART; SM00967; SpoU_sub_bind; 1.
DR SUPFAM; SSF75217; alpha/beta knot; 1.
DR SUPFAM; SSF55315; L30e-like; 1.
PE 4: Predicted;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603,
KW ECO:0000313|EMBL:AGS06973.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000015216};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000313|EMBL:AGS06973.1}.
FT DOMAIN 7..83
FT /note="RNA 2-O ribose methyltransferase substrate binding"
FT /evidence="ECO:0000259|SMART:SM00967"
SQ SEQUENCE 248 AA; 27474 MW; 234DA017E481E4D9 CRC64;
MSIKEKIIFG FHAINSKIIQ NSSSIKTLYI DISRNDNRMK NIIKNAKLAN IHIISINNKK
LFHIAKTHNH QGVVAKIKEF SFKKNLYELL DSIKEPLLLL ILDEITDPHN LGACLRVADG
AGVHAIISTK NNSVGLNATV AKVSSGAIET IPFFTVTNLS NTLCKLKERN IYLIGASNKS
KKSLYNTNFL DSSAIIMGSE KKGLRHLTKK NCDILINIPM SGLIESLNVS VAAGIILFEA
RRQRIINI
//