GenomeNet

Database: UniProt
Entry: S5RWR0_RHIET
LinkDB: S5RWR0_RHIET
Original site: S5RWR0_RHIET 
ID   S5RWR0_RHIET            Unreviewed;       326 AA.
AC   S5RWR0;
DT   16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT   16-OCT-2013, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   RecName: Full=Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024};
GN   Name=cobD {ECO:0000256|HAMAP-Rule:MF_00024,
GN   ECO:0000313|EMBL:AGS22278.1};
GN   ORFNames=REMIM1_CH02504 {ECO:0000313|EMBL:AGS22278.1};
OS   Rhizobium etli bv. mimosae str. Mim1.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
OX   NCBI_TaxID=1328306 {ECO:0000313|EMBL:AGS22278.1, ECO:0000313|Proteomes:UP000015261};
RN   [1] {ECO:0000313|EMBL:AGS22278.1, ECO:0000313|Proteomes:UP000015261}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Mim1 {ECO:0000313|EMBL:AGS22278.1,
RC   ECO:0000313|Proteomes:UP000015261};
RA   Rogel M.A., Bustos P., Santamaria R.I., Gonzalez V., Romero D.,
RA   Cevallos M.A., Lozano L., Ormeno-Orrillo E., Martinez-Romero E.;
RT   "Genomic basis of Rhizobium etli symbiovar mimosae and its prevalence among
RT   Phaseolus vulgaris nodule bacteria.";
RL   Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Converts cobyric acid to cobinamide by the addition of
CC       aminopropanol on the F carboxylic group. {ECO:0000256|HAMAP-
CC       Rule:MF_00024}.
CC   -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004953, ECO:0000256|HAMAP-Rule:MF_00024}.
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|ARBA:ARBA00004651,
CC       ECO:0000256|HAMAP-Rule:MF_00024}; Multi-pass membrane protein
CC       {ECO:0000256|ARBA:ARBA00004651, ECO:0000256|HAMAP-Rule:MF_00024}.
CC       Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein
CC       {ECO:0000256|ARBA:ARBA00004141}.
CC   -!- SIMILARITY: Belongs to the CobD/CbiB family.
CC       {ECO:0000256|ARBA:ARBA00006263, ECO:0000256|HAMAP-Rule:MF_00024}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|HAMAP-Rule:MF_00024}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP005950; AGS22278.1; -; Genomic_DNA.
DR   RefSeq; WP_020921532.1; NC_021905.1.
DR   AlphaFoldDB; S5RWR0; -.
DR   KEGG; rel:REMIM1_CH02504; -.
DR   PATRIC; fig|1328306.3.peg.2540; -.
DR   HOGENOM; CLU_054212_0_1_5; -.
DR   UniPathway; UPA00148; -.
DR   Proteomes; UP000015261; Chromosome.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0015420; F:ABC-type vitamin B12 transporter activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0048472; F:threonine-phosphate decarboxylase activity; IEA:InterPro.
DR   GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR   HAMAP; MF_00024; CobD_CbiB; 1.
DR   InterPro; IPR004485; Cobalamin_biosynth_CobD/CbiB.
DR   NCBIfam; TIGR00380; cobal_cbiB; 1.
DR   PANTHER; PTHR34308; COBALAMIN BIOSYNTHESIS PROTEIN CBIB; 1.
DR   PANTHER; PTHR34308:SF1; COBALAMIN BIOSYNTHESIS PROTEIN CBIB; 1.
DR   Pfam; PF03186; CobD_Cbib; 1.
PE   3: Inferred from homology;
KW   Cell membrane {ECO:0000256|ARBA:ARBA00022475, ECO:0000256|HAMAP-
KW   Rule:MF_00024};
KW   Cobalamin biosynthesis {ECO:0000256|ARBA:ARBA00022573, ECO:0000256|HAMAP-
KW   Rule:MF_00024};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_00024};
KW   Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|HAMAP-
KW   Rule:MF_00024};
KW   Transmembrane helix {ECO:0000256|ARBA:ARBA00022989, ECO:0000256|HAMAP-
KW   Rule:MF_00024}.
FT   TRANSMEM        60..79
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00024"
FT   TRANSMEM        86..104
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00024"
FT   TRANSMEM        167..184
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00024"
SQ   SEQUENCE   326 AA;  34611 MW;  71A0F8082F8573B6 CRC64;
     MTIDLNLLVL LLALLLDRIL GDPQWLWSRV PHPVAIFGAV ISYADQQLNP SSLTGHQRRM
     NGVAAILALL LLALAAGFVF NRFFALFGLA GIPLETGLVA ILLAQKSLAD HVAAVAVALR
     EEGLAGGRAA VARIVGRDPE TLDEPAVCRA AIESLAENFS DGVVAPAIWY AIFGLPGLFA
     YKMLNTADSM IGHRSEKYID FGWAAARLDD VANWPAARLS ILLIAAGAWI RRGTSACREA
     IRVAMRDGGL HRSPNSGRPE AAMAGALNVQ LAGPRIYGGV LITEPMINNP GRDVATSGDI
     EDGVSVYQAS CMVLAGVTFG LFLCFL
//
DBGET integrated database retrieval system