ID S5UGE5_CAEV Unreviewed; 249 AA.
AC S5UGE5;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 08-NOV-2023, entry version 26.
DE RecName: Full=Env polyprotein {ECO:0000256|ARBA:ARBA00029888};
DE Flags: Fragment;
GN Name=env {ECO:0000313|EMBL:AGS55329.1};
OS Small ruminant lentivirus.
OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
OC Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus;
OC Caprine arthritis encephalitis virus.
OX NCBI_TaxID=254355 {ECO:0000313|EMBL:AGS55329.1};
RN [1] {ECO:0000313|EMBL:AGS55329.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=0335185C03 {ECO:0000313|EMBL:AGS55329.1};
RX PubMed=23895262; DOI=10.1186/1297-9716-44-64;
RA Sider L.H., Heaton M.P., Chitko-McKown C.G., Harhay G.P., Smith T.P.,
RA Leymaster K.A., Laegreid W.W., Clawson M.L.;
RT "Small ruminant lentivirus genetic subgroups associate with sheep TMEM154
RT genotypes.";
RL Vet. Res. 44:64-64(2013).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|ARBA:ARBA00004202};
CC Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004202}. Cell
CC membrane {ECO:0000256|ARBA:ARBA00004251}; Single-pass type I membrane
CC protein {ECO:0000256|ARBA:ARBA00004251}. Host cell membrane
CC {ECO:0000256|ARBA:ARBA00004505}; Peripheral membrane protein
CC {ECO:0000256|ARBA:ARBA00004505}. Host cell membrane
CC {ECO:0000256|ARBA:ARBA00004402}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004402}. Membrane
CC {ECO:0000256|ARBA:ARBA00004170}; Peripheral membrane protein
CC {ECO:0000256|ARBA:ARBA00004170}. Membrane
CC {ECO:0000256|ARBA:ARBA00004479}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004479}. Virion membrane
CC {ECO:0000256|ARBA:ARBA00004650}; Peripheral membrane protein
CC {ECO:0000256|ARBA:ARBA00004650}. Virion membrane
CC {ECO:0000256|ARBA:ARBA00004563}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004563}.
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DR EMBL; KF025161; AGS55329.1; -; Genomic_DNA.
DR GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0019031; C:viral envelope; IEA:UniProtKB-KW.
DR GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.5.440; ATP synthase delta/epsilon subunit, C-terminal domain; 1.
DR InterPro; IPR000328; GP41-like.
DR Pfam; PF00517; GP41; 1.
DR SUPFAM; SSF58069; Virus ectodomain; 1.
PE 4: Predicted;
KW Cleavage on pair of basic residues {ECO:0000256|ARBA:ARBA00022685};
KW Disulfide bond {ECO:0000256|ARBA:ARBA00023157};
KW Host cell membrane {ECO:0000256|ARBA:ARBA00022511};
KW Host membrane {ECO:0000256|ARBA:ARBA00022870};
KW Host-virus interaction {ECO:0000256|ARBA:ARBA00022581};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Viral envelope protein {ECO:0000313|EMBL:AGS55329.1};
KW Virion {ECO:0000256|ARBA:ARBA00022844}.
FT TRANSMEM 144..169
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 7..178
FT /note="Retroviral envelope protein GP41-like"
FT /evidence="ECO:0000259|Pfam:PF00517"
FT REGION 196..216
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:AGS55329.1"
FT NON_TER 249
FT /evidence="ECO:0000313|EMBL:AGS55329.1"
SQ SEQUENCE 249 AA; 29262 MW; D932DBF914C42347 CRC64;
RTAVQSLANA TAAQQNVLEA TYAMVQHVAK GIRILEARVA RVEALVDRMM VYHELDCWHY
QHFCVTSTRS EVAKYVNWTR FKDNCTWQQW EEEIQQHEAN LSQLLREAAL QVHIAQRDAS
RIPDVWTALQ EAFNWSGWFS WLKYIPWIVM GIIGFICFRI VMCFVSTCLQ AYKQIREIRY
TQVTVVIEQP VDLEEKAREE EDGSNGFESS KQQRRTSQRS IIQIGRAQWV AWKNSPWGQG
WRKILYMSL
//