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Database: UniProt
Entry: S5UGE5_CAEV
LinkDB: S5UGE5_CAEV
Original site: S5UGE5_CAEV 
ID   S5UGE5_CAEV             Unreviewed;       249 AA.
AC   S5UGE5;
DT   16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT   16-OCT-2013, sequence version 1.
DT   08-NOV-2023, entry version 26.
DE   RecName: Full=Env polyprotein {ECO:0000256|ARBA:ARBA00029888};
DE   Flags: Fragment;
GN   Name=env {ECO:0000313|EMBL:AGS55329.1};
OS   Small ruminant lentivirus.
OC   Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
OC   Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus;
OC   Caprine arthritis encephalitis virus.
OX   NCBI_TaxID=254355 {ECO:0000313|EMBL:AGS55329.1};
RN   [1] {ECO:0000313|EMBL:AGS55329.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=0335185C03 {ECO:0000313|EMBL:AGS55329.1};
RX   PubMed=23895262; DOI=10.1186/1297-9716-44-64;
RA   Sider L.H., Heaton M.P., Chitko-McKown C.G., Harhay G.P., Smith T.P.,
RA   Leymaster K.A., Laegreid W.W., Clawson M.L.;
RT   "Small ruminant lentivirus genetic subgroups associate with sheep TMEM154
RT   genotypes.";
RL   Vet. Res. 44:64-64(2013).
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|ARBA:ARBA00004202};
CC       Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004202}. Cell
CC       membrane {ECO:0000256|ARBA:ARBA00004251}; Single-pass type I membrane
CC       protein {ECO:0000256|ARBA:ARBA00004251}. Host cell membrane
CC       {ECO:0000256|ARBA:ARBA00004505}; Peripheral membrane protein
CC       {ECO:0000256|ARBA:ARBA00004505}. Host cell membrane
CC       {ECO:0000256|ARBA:ARBA00004402}; Single-pass type I membrane protein
CC       {ECO:0000256|ARBA:ARBA00004402}. Membrane
CC       {ECO:0000256|ARBA:ARBA00004170}; Peripheral membrane protein
CC       {ECO:0000256|ARBA:ARBA00004170}. Membrane
CC       {ECO:0000256|ARBA:ARBA00004479}; Single-pass type I membrane protein
CC       {ECO:0000256|ARBA:ARBA00004479}. Virion membrane
CC       {ECO:0000256|ARBA:ARBA00004650}; Peripheral membrane protein
CC       {ECO:0000256|ARBA:ARBA00004650}. Virion membrane
CC       {ECO:0000256|ARBA:ARBA00004563}; Single-pass type I membrane protein
CC       {ECO:0000256|ARBA:ARBA00004563}.
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DR   EMBL; KF025161; AGS55329.1; -; Genomic_DNA.
DR   GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0019031; C:viral envelope; IEA:UniProtKB-KW.
DR   GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   Gene3D; 1.20.5.440; ATP synthase delta/epsilon subunit, C-terminal domain; 1.
DR   InterPro; IPR000328; GP41-like.
DR   Pfam; PF00517; GP41; 1.
DR   SUPFAM; SSF58069; Virus ectodomain; 1.
PE   4: Predicted;
KW   Cleavage on pair of basic residues {ECO:0000256|ARBA:ARBA00022685};
KW   Disulfide bond {ECO:0000256|ARBA:ARBA00023157};
KW   Host cell membrane {ECO:0000256|ARBA:ARBA00022511};
KW   Host membrane {ECO:0000256|ARBA:ARBA00022870};
KW   Host-virus interaction {ECO:0000256|ARBA:ARBA00022581};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius};
KW   Viral envelope protein {ECO:0000313|EMBL:AGS55329.1};
KW   Virion {ECO:0000256|ARBA:ARBA00022844}.
FT   TRANSMEM        144..169
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          7..178
FT                   /note="Retroviral envelope protein GP41-like"
FT                   /evidence="ECO:0000259|Pfam:PF00517"
FT   REGION          196..216
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:AGS55329.1"
FT   NON_TER         249
FT                   /evidence="ECO:0000313|EMBL:AGS55329.1"
SQ   SEQUENCE   249 AA;  29262 MW;  D932DBF914C42347 CRC64;
     RTAVQSLANA TAAQQNVLEA TYAMVQHVAK GIRILEARVA RVEALVDRMM VYHELDCWHY
     QHFCVTSTRS EVAKYVNWTR FKDNCTWQQW EEEIQQHEAN LSQLLREAAL QVHIAQRDAS
     RIPDVWTALQ EAFNWSGWFS WLKYIPWIVM GIIGFICFRI VMCFVSTCLQ AYKQIREIRY
     TQVTVVIEQP VDLEEKAREE EDGSNGFESS KQQRRTSQRS IIQIGRAQWV AWKNSPWGQG
     WRKILYMSL
//
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