ID S6HQB8_9GAMM Unreviewed; 589 AA.
AC S6HQB8;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE RecName: Full=Sigma-54 factor interaction domain-containing protein {ECO:0000259|PROSITE:PS50045};
GN ORFNames=OFPI_07360 {ECO:0000313|EMBL:EPJ54297.1};
OS Osedax symbiont Rs2.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales;
OC Oceanospirillaceae.
OX NCBI_TaxID=1330035 {ECO:0000313|EMBL:EPJ54297.1, ECO:0000313|Proteomes:UP000014830};
RN [1] {ECO:0000313|EMBL:EPJ54297.1, ECO:0000313|Proteomes:UP000014830}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Rs2 {ECO:0000313|Proteomes:UP000014830};
RA Yi H., Goffredi S.;
RT "Comparative genomics of two novel heterotrophic symbionts of deep-sea
RT Osedax worms: functional variation and environmental selection.";
RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EPJ54297.1}.
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DR EMBL; ASZI01000045; EPJ54297.1; -; Genomic_DNA.
DR AlphaFoldDB; S6HQB8; -.
DR Proteomes; UP000014830; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.20.20.70; Aldolase class I; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR009215; TIM-br_IGPS-like.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF09370; PEP_hydrolase; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF51621; Phosphoenolpyruvate/pyruvate domain; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000014830};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 275..501
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 589 AA; 65004 MW; 38F4FA3EE8521A72 CRC64;
MKKLITSKKS SFSFAAAVGT GMTAKAAEKG GAEFLLLINA GRLRMRGAPS LSCYLPLENV
NSWIANIGKT EVLNRCEIPV LMGCSVANPQ ENINDIITLA KESGFTGVTN FPSACLIDGE
IREVLELQNM GFEKECELIE IASKQGLQTL AYVTNNDEAL QMAAAGASRL CINIGFTNSS
SVEPSNLTVD NTVKIIDRAL RNIPDHISTY VEGGPITTPE SALAICSKSR VQGYIAGSTI
DRFPLEEAII NIAKSYRVIS NIEDVDSIIQ ESSYIFGTSK KMSQIKKMVE QFATLNTPIL
ITGPSGSGKG ALVEEIHQRS DKHRNKIIHI DCLNLALEGG LEFLFGSVAG YQGKNSASKI
GVLEYVNNTT IHFEEISALD HETQTKLINF FDTGTVRRLG DDKHHQVNCR IISSTREPID
QLLKKGILIE ELYYRLSALY ISIPALNKRT EDIPFLAKKF IADMKNSQAQ KISNSGLSAL
MEYDWPGNIR EFKNALTRAC LLSHSKTLKS SDFNFLKELL ITNSIDEASV VSQKSLDKES
LCSQPLTEKD WITETLQRNR FKRGPTATEL GITTRTLYSK IKKYNIYSP
//
