ID S8EFC1_9LAMI Unreviewed; 1380 AA.
AC S8EFC1;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
DE Flags: Fragment;
GN ORFNames=M569_00001 {ECO:0000313|EMBL:EPS74753.1};
OS Genlisea aurea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea.
OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS74753.1, ECO:0000313|Proteomes:UP000015453};
RN [1] {ECO:0000313|EMBL:EPS74753.1, ECO:0000313|Proteomes:UP000015453}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23855885;
RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., Kondrashov A.S.,
RA Logacheva M.D.;
RT "The miniature genome of a carnivorous plant Genlisea aurea contains a low
RT number of genes and short non-coding sequences.";
RL BMC Genomics 14:476-476(2013).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EPS74753.1}.
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DR EMBL; AUSU01000001; EPS74753.1; -; Genomic_DNA.
DR OrthoDB; 451894at2759; -.
DR Proteomes; UP000015453; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 3.10.450.40; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF36; DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1; 1.
DR Pfam; PF11523; DUF3223; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000015453};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 187..468
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:EPS74753.1"
FT NON_TER 1380
FT /evidence="ECO:0000313|EMBL:EPS74753.1"
SQ SEQUENCE 1380 AA; 154326 MW; 369120343069CD2B CRC64;
KISAIVVSNV NEVSDASLGL PSINARECLT CGANSAKECE GHFGVINFNY TILNPYYMPE
IANILNKICP GCKSIRQRKI KKGDSASQQN CKYCNVTSLG YPKMKFRVST REVFAKTAII
AEVQEMAVNQ HHCIGLASDY WDIIPKDSPQ DQSDIPSNRR VLYPSQVYSI LKDVCPKTLE
ALLKRKNSIF LNSLLVTPNS HRVREFGGHI TVDGTTRLYR KLTDFRGSAN ELNARVLERY
KICSEKVSAI EKIYEKQSSN DSASSSSGLR NIKELILAKR TDNAFRMVVV GDPRLKVDEI
GLPIQIAESV LISDLISIHS WGKLESWCDL MLYKKAPFSP FSVIRNGQKT HIFSKDMLQV
GDSISRPISD GDIVLINRPP SIHQHSLLAL SVKVLPIKSV IAINPLTCLP LRGDFDGDCL
HGFVPQSLNS RVEIGELASL KKQLVNGQNG RSLMSLGQDS LTAAYLILNN SVTLNKAEFQ
QLQMFCSCVP ILPAIVNMSS NGTWWTGKQL FTLLLPVDSG FDYVSSDVCI RKGELISSSN
CTSWLRDADE NLYLCLVRHC GDRALGFLNT AQEVLCEWLS RQGLSVSLSD LYISSDRHSR
KNLLEEVYYG LQEAGRLSEV SSLMVDQHRD FLVEHMGNME DSIKEHTAIS SHARAELFQA
SVSASRSVFR DLQNLVYRYA SNENSFISML KSGSKGNLQK FVQHSMCVGL QHSLAPLSFS
VADQLTCASW NKEKCYSDIP KSVVSDSYIV CSIVKNSFLE GLNPIQCFTH SLTSRDSSFS
GHADVSGTIC RRLMYFMRDL IIGYDGTVRN CYGNQVVQFN YFSGDVNKDA AMGGHPVGSL
AGCAISEAAY SALDLPISAL EPSPLLALKE VLECGVKRST RCKTASLFLS KGLRRWAHGF
EYGALEVKNH LERLCFSDIV SDVRICPWID DNTSTTSPWT CNFYINKEVA KKMRLKMHSI
VDALHRNNKL ASKKLKIYLP ALWISTKLCS EADVKRSDSF CIAAKLIMKH EKFSDMEILR
DMVVPVLLKT VIKGFPEFKK VDILWKDEPN HEKVARRTSG ELFIRVSMSE YCDPNKFWSN
LVDSCLRIRN LIDWERSLPD DILDYSNAFG ISSAWQSFVK NLHSSIIDTG KTILPEHLIV
TANCLSATGE FVALNAKGLV NQRKEIDIRS PFNQATFLNP SDTFVKAAKA CQTDDLVGSV
EALSWGQTPR IGTGCQFDLI YKGKGHETAK NEDVYGLLIS HDGRAKSNVK ERSLSMKSSN
PLHGINTQQH KSWLERLSAN MNHLSVLGIK KISQKLKRIL KEYPMDRQLS GEDKSTALTA
LQFHPRWPEK IGSGIQEIKV GLHPEHQQTC FILKRSDGTE EDFSYRKCIN HALELVAPRK
//