ID U2X7S3_GEOKU Unreviewed; 437 AA.
AC U2X7S3;
DT 13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT 13-NOV-2013, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE SubName: Full=RNA polymerase factor sigma-54 {ECO:0000313|EMBL:GAD14832.1};
GN ORFNames=GBL_3049 {ECO:0000313|EMBL:GAD14832.1};
OS Geobacillus kaustophilus GBlys.
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Geobacillus;
OC Geobacillus thermoleovorans group.
OX NCBI_TaxID=1337888 {ECO:0000313|EMBL:GAD14832.1, ECO:0000313|Proteomes:UP000016424};
RN [1] {ECO:0000313|Proteomes:UP000016424}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GBlys {ECO:0000313|Proteomes:UP000016424};
RA Doi K., Mori K., Martono H., Nagayoshi Y., Fujino Y., Tashiro K.,
RA Kuhara S., Ohshima T.;
RT "Draft Genome Sequence of Geobacillus kaustophilus GBlys, a Lysogenic
RT Strain with Bacteriophage phiOH2.";
RL Genome Announc.1:e00634-13(2013).
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAD14832.1}.
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DR EMBL; BASG01000041; GAD14832.1; -; Genomic_DNA.
DR AlphaFoldDB; U2X7S3; -.
DR Proteomes; UP000016424; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 71..259
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 273..432
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 437 AA; 50253 MW; 759DA50594B0C362 CRC64;
MTMRAELWQE QRLQLSLTKE LVQAIELLQY SAVDLEAFLY EQSLENPFLE IRRTRVRQRP
SRTERDQKQW LENIGARAET LVGHLLSQLP ALKLADREER IVRYLIASLD EDGYLRVPLA
ELAARFSASE QEMERGLRLV QSLDPPGVGA RDLAECLLLQ LERLPERDEL AEMIVRYHFV
PFAEKSWKTL AKQLGVSLGE LQRVFELIRT LEPRPGIHYS SETPPLVVPD VIVVRGAEGD
WMAAYNDDIH PELGWNRDYE RRIAASGDRH AEQFIKEKYR QFTWLAKSLE QRKQTLLHLT
AVIIDRQRSC LEFGLSALKP MTMREVAEEL GVHESTVSRA VRHKYVQTPF GTVELRRFFS
NAATAAGDEA ASSARVKAII EALISEEDRR APLSDQQLAD LLRDRHGIAI SRRTVAKYRE
QLRIPSSAKR RQYIGLP
//
