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Database: UniProt
Entry: U2Y5M7_9SPHN
LinkDB: U2Y5M7_9SPHN
Original site: U2Y5M7_9SPHN 
ID   U2Y5M7_9SPHN            Unreviewed;       401 AA.
AC   U2Y5M7;
DT   13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2013, sequence version 1.
DT   24-JAN-2024, entry version 47.
DE   RecName: Full=ornithine decarboxylase {ECO:0000256|ARBA:ARBA00034138};
DE            EC=4.1.1.17 {ECO:0000256|ARBA:ARBA00034138};
GN   ORFNames=NT2_02_05100 {ECO:0000313|EMBL:GAD48426.1};
OS   Caenibius tardaugens NBRC 16725.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Erythrobacteraceae; Caenibius.
OX   NCBI_TaxID=1219035 {ECO:0000313|EMBL:GAD48426.1, ECO:0000313|Proteomes:UP000016568};
RN   [1] {ECO:0000313|EMBL:GAD48426.1, ECO:0000313|Proteomes:UP000016568}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 16725 {ECO:0000313|EMBL:GAD48426.1,
RC   ECO:0000313|Proteomes:UP000016568};
RA   Isaki S., Hosoyama A., Tsuchikane K., Katsumata H., Ando Y., Yamazaki S.,
RA   Fujita N.;
RT   "Whole genome shotgun sequence of Novosphingobium tardaugens NBRC 16725.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H(+) + L-ornithine = CO2 + putrescine; Xref=Rhea:RHEA:22964,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:16526, ChEBI:CHEBI:46911,
CC         ChEBI:CHEBI:326268; EC=4.1.1.17;
CC         Evidence={ECO:0000256|ARBA:ARBA00034037};
CC   -!- COFACTOR:
CC       Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC         Evidence={ECO:0000256|ARBA:ARBA00001933,
CC         ECO:0000256|PIRSR:PIRSR600183-50};
CC   -!- PATHWAY: Amine and polyamine biosynthesis; putrescine biosynthesis via
CC       L-ornithine pathway; putrescine from L-ornithine: step 1/1.
CC       {ECO:0000256|ARBA:ARBA00034115}.
CC   -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC       {ECO:0000256|ARBA:ARBA00008872, ECO:0000256|RuleBase:RU003737}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:GAD48426.1}.
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DR   EMBL; BASZ01000002; GAD48426.1; -; Genomic_DNA.
DR   RefSeq; WP_021689333.1; NZ_CP034179.1.
DR   AlphaFoldDB; U2Y5M7; -.
DR   KEGG; ntd:EGO55_02100; -.
DR   eggNOG; COG0019; Bacteria.
DR   OrthoDB; 9802147at2; -.
DR   Proteomes; UP000016568; Unassembled WGS sequence.
DR   GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR   GO; GO:0006596; P:polyamine biosynthetic process; IEA:InterPro.
DR   CDD; cd00622; PLPDE_III_ODC; 1.
DR   Gene3D; 3.20.20.10; Alanine racemase; 1.
DR   InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR   InterPro; IPR022643; De-COase2_C.
DR   InterPro; IPR022657; De-COase2_CS.
DR   InterPro; IPR022644; De-COase2_N.
DR   InterPro; IPR022653; De-COase2_pyr-phos_BS.
DR   InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR   InterPro; IPR002433; Orn_de-COase.
DR   InterPro; IPR029066; PLP-binding_barrel.
DR   PANTHER; PTHR11482; ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE; 1.
DR   PANTHER; PTHR11482:SF6; ORNITHINE DECARBOXYLASE 1-RELATED; 1.
DR   Pfam; PF02784; Orn_Arg_deC_N; 1.
DR   Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR   PRINTS; PR01179; ODADCRBXLASE.
DR   SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR   SUPFAM; SSF51419; PLP-binding barrel; 1.
DR   PROSITE; PS00878; ODR_DC_2_1; 1.
DR   PROSITE; PS00879; ODR_DC_2_2; 1.
PE   3: Inferred from homology;
KW   Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50};
KW   Reference proteome {ECO:0000313|Proteomes:UP000016568}.
FT   DOMAIN          35..266
FT                   /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF02784"
FT   DOMAIN          268..350
FT                   /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF00278"
FT   ACT_SITE        326
FT                   /note="Proton donor"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT   MOD_RES         48
FT                   /note="N6-(pyridoxal phosphate)lysine"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ   SEQUENCE   401 AA;  43737 MW;  077CEC0BCD6DC902 CRC64;
     MYIYPDASAV VRDLAPDEPV ILNRPHAAAR AGRFFAEKFP GKSLYAVKAN PSPDLIEILW
     ASGITHYDVA SIAEVRMVRG LLPDATLCFM HPVKTASAIR EAYFDHGVRT FSLDTEEELN
     KIVEATKDAA GNVAADLRLC VRLRVSSEYS ELSLASKFGV DLANAAPLLQ ATRQVADWLG
     VCFHVGSQAM TPFAYVQALD RVRAAIAQAA VTVDIVDVGG GFPSVYPGME PPPLEDYFAI
     IHRHFEALPI AYNAELWCEP GRALCAEYSS LIVKVEKRRG EELYINDGAY GALFDAAHVG
     WRFPVKVLDA SRSASEAEFA FYGPTCDDAD YMEGPFMLPG DVVAGDYIEV GMLGAYGCAM
     RTAFNGFGRG EVVRVADEPM ASLYRGDRAD PRQSDNVVSL R
//
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