ID U3MAZ5_9GENT Unreviewed; 1380 AA.
AC U3MAZ5;
DT 11-DEC-2013, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 2.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
GN Name=rpoC2 {ECO:0000313|EMBL:AGW04277.2};
OS Secamone afzelii.
OG Plastid {ECO:0000313|EMBL:AGW04277.2}.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Gentianales; Apocynaceae; Secamonoideae; Secamone.
OX NCBI_TaxID=52852 {ECO:0000313|EMBL:AGW04277.2};
RN [1] {ECO:0000313|EMBL:AGW04277.2}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=24029811; DOI=10.1093/gbe/evt140;
RA Straub S.C., Cronn R.C., Edwards C., Fishbein M., Liston A.;
RT "Horizontal transfer of DNA from the mitochondrial to the plastid genome
RT and its subsequent evolution in milkweeds (apocynaceae).";
RL Genome Biol. Evol. 5:1872-1885(2013).
RN [2] {ECO:0000313|EMBL:AGW04277.2}
RP NUCLEOTIDE SEQUENCE.
RA Straub S.C.K., Cronn R.C., Edwards C., Fishbein M., Liston A.;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; KF539845; AGW04277.2; -; Genomic_DNA.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0009536; C:plastid; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02655; RNAP_beta'_C; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 1.10.1790.20; -; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR HAMAP; MF_01324; RNApol_bact_RpoC2; 1.
DR InterPro; IPR012756; DNA-dir_RpoC2_beta_pp.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR NCBIfam; TIGR02388; rpoC2_cyan; 1.
DR PANTHER; PTHR48355; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR PANTHER; PTHR48355:SF1; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 2.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Plastid {ECO:0000313|EMBL:AGW04277.2};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 97..161
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF05000"
FT DOMAIN 176..369
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
FT DOMAIN 1186..1271
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
FT REGION 1361..1380
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1380 AA; 156501 MW; FA4FE266CC51F5B7 CRC64;
MEVLMAERAN LVFHNKAIDG TAMKRLISRL IDHFGMAYTS HILDQVKTLG FQQATATSIS
LGIDDLLTIP SKGWLVQDAE QQSLILEKHH HYGNVHAVEK LRQSIEIWYA TSEYLRQEMN
PNFRMTDPFN PVHIMSFSGA RGNASQVHQL VGMRGLMSDP QGQMIDLPIQ SNLREGLSLT
EYIISCYGAR KGVVDTAVRT SDAGYLTRRL VEVVQHIVVR RTDCGTPRSI SVSPRNGIMP
ERIFIQTLIG RVLADDIYMG PRCIAARKQS LGIELVNRFI TFRVQPISIR TPFTCRSTSW
ICRLCYGRSP THGDLVELGE AVGIIAGQSI GEPGTQLTLR TFHTGGVFTG GTAEHVRAPS
NGKIKFNEDL VHPTRTRHGH PAFLCSIDLY VTIESEDIIH NVNIPPKSFL LVQNDQYVES
EQVIAEIRAG TSTLNFKEKV RKYIYSDSDG EMHWSTDVDH APEFTYGNVH LLPKTSHLWI
LLGGPCRSSP VSLSLHKDQD QTGAHSLSVK QRYTSNLSVT KRHKFFSSDF YGKKKGSIPD
YSHLNQIICT AHCNLIYPAI LRENSDLLSK RRRNRFIIPL QSCENELMSP PGISIELPIN
GIFRRNSILS YFDDPRYRRK SSGITKYGTI EMHSILKKED SIEYRGVKEF SPKYQMKVGR
FFFIPEEVHI LPGSSSIMVR NNSLIGVDTQ ITLNLRSRVG GLVRVERKKK RIELKIFSGD
IHFPGEIDTI SRHSGVLIPP GREKGNSKEF QKMKNWIYVQ RITPSKKKHF VLVRPVVTYE
ITDGLNLATL FPPDMLQERD IVQLRVINYI LYGKGKPIRG IYDTTLQLVR TCLVLNWDQD
KKSSSGEEAR ASFVEIRING LIRHFLRIDL AKSPISYIGK RNDPSGSGLL SHNGSDYINI
NPFCSIYSYS KARIQQFLNP NQGTIHTLLN RNKEFQPLII LLSSNCSRMG PFNDLKYHNG
IKDQRDPLIP IRNSLGPLGS APPIENFYLF SHLITHNQIL LTNYLQPDNF KRTFQVIKYY
SMDESGKFYN PDPCSKIIFN PFNLNWYFLR HNYCEEASTI ISLGQFICEN VCIAKSGPHL
KSSQVIFVQA DSVVIRSAKP YLATPGATVH GHYGEILYEG DTLVTFIYEK SRSGDITQGL
PKVEQVLEVR SIDSISMNLE KRIEGWNECI TRILGIPWGF FISAELTIVQ SRISLVNKIQ
KVYRSQGVQI HNRHIEIIVR QITSKVLVSE DRMSNVFSPR ELIGLLRAER TGRALEEAIC
YRAILLGITR ASLNTQSFIS EASFQETARV LAKAALRGRI DWLKGLKENV VLGGMIPVGT
GFKGLVHPSK QHNKIPLKTK KKNLFEAKMR DILFHQRKLV DSSPSNSKNF HDTSEQYRIY
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