ID U4K9R6_9VIBR Unreviewed; 336 AA.
AC U4K9R6;
DT 11-DEC-2013, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 1.
DT 24-JAN-2024, entry version 49.
DE SubName: Full=Putative Ribose operon repressor {ECO:0000313|EMBL:CCO59407.1};
GN ORFNames=VIBNI_A3421 {ECO:0000313|EMBL:CCO59407.1};
OS Vibrio nigripulchritudo.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=28173 {ECO:0000313|EMBL:CCO59407.1, ECO:0000313|Proteomes:UP000016895};
RN [1] {ECO:0000313|EMBL:CCO59407.1, ECO:0000313|Proteomes:UP000016895}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SnF1 {ECO:0000313|Proteomes:UP000016895};
RX PubMed=23739050; DOI=10.1038/ismej.2013.90;
RA Goudenege D., Labreuche Y., Krin E., Ansquer D., Mangenot S., Calteau A.,
RA Medigue C., Mazel D., Polz M.F., Le Roux F.;
RT "Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo
RT identifies virulence-associated traits.";
RL ISME J. 7:1985-1996(2013).
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DR EMBL; FO203526; CCO59407.1; -; Genomic_DNA.
DR RefSeq; WP_022551861.1; NC_022528.1.
DR AlphaFoldDB; U4K9R6; -.
DR STRING; 28173.VIBNI_A3421; -.
DR KEGG; vni:VIBNI_A3421; -.
DR PATRIC; fig|1260221.3.peg.3244; -.
DR eggNOG; COG1609; Bacteria.
DR OrthoDB; 9798934at2; -.
DR Proteomes; UP000016895; Chromosome 1.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01392; HTH_LacI; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR000843; HTH_LacI.
DR InterPro; IPR046335; LacI/GalR-like_sensor.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR028082; Peripla_BP_I.
DR PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR PANTHER; PTHR30146:SF143; LACTOSE OPERON REPRESSOR; 1.
DR Pfam; PF00356; LacI; 1.
DR Pfam; PF13377; Peripla_BP_3; 1.
DR SMART; SM00354; HTH_LACI; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS00356; HTH_LACI_1; 1.
DR PROSITE; PS50932; HTH_LACI_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000016895};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..56
FT /note="HTH lacI-type"
FT /evidence="ECO:0000259|PROSITE:PS50932"
SQ SEQUENCE 336 AA; 36809 MW; 190E88F0B5AB9E0C CRC64;
MATLKDVAKH AGVSVTTVSY FLNNKKPLKE ETKERIQAAM TELNYQYNLG AAQLKRGQRD
LKTVGVVSIS NNNPFFLELF LAIQKEAKDR KLALLSSFVD GTESSLDSHV EIMRPQIDAL
IVISKNTLVS QEFCDSSLGI PIVCIAFDVG TIQSSCGGTK LDIQNEMGGY IVGKYLISKG
HKNVTCVTGE ASTDATTGRI RGFKKAYADL LGQDEMKQVT SDFSYQGGVD AMFEIYSQPT
LPSAVFCFND MMGLGVLNTA HELGIKIPQD LSIIGYDNIY QSELSYPKLT TVDIPLNTFA
AQALDGIQRK FDEKDALCEI KIMPRLVIRG SVSDLA
//
