ID U5D3S5_AMBTC Unreviewed; 506 AA.
AC U5D3S5;
DT 11-DEC-2013, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=AMTR_s00066p00163770 {ECO:0000313|EMBL:ERN20261.1};
OS Amborella trichopoda.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella.
OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN20261.1, ECO:0000313|Proteomes:UP000017836};
RN [1] {ECO:0000313|Proteomes:UP000017836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24357323;
RG Amborella Genome Project;
RT "The Amborella genome and the evolution of flowering plants.";
RL Science 342:1241089-1241089(2013).
CC -!- SIMILARITY: Belongs to the HTATSF1 family.
CC {ECO:0000256|ARBA:ARBA00007747}.
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DR EMBL; KI392060; ERN20261.1; -; Genomic_DNA.
DR RefSeq; XP_006858794.1; XM_006858732.2.
DR AlphaFoldDB; U5D3S5; -.
DR STRING; 13333.U5D3S5; -.
DR EnsemblPlants; ERN20261; ERN20261; AMTR_s00066p00163770.
DR GeneID; 18448671; -.
DR Gramene; ERN20261; ERN20261; AMTR_s00066p00163770.
DR KEGG; atr:18448671; -.
DR eggNOG; KOG1548; Eukaryota.
DR HOGENOM; CLU_026945_1_0_1; -.
DR OMA; DTDFRFG; -.
DR OrthoDB; 10213at2759; -.
DR Proteomes; UP000017836; Unassembled WGS sequence.
DR GO; GO:0005686; C:U2 snRNP; IBA:GO_Central.
DR GO; GO:0005684; C:U2-type spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR GO; GO:0009910; P:negative regulation of flower development; IEA:EnsemblPlants.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:EnsemblPlants.
DR CDD; cd12281; RRM1_TatSF1_like; 1.
DR CDD; cd12285; RRM3_RBM39_like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR025640; GYF_2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR034393; TatSF1-like.
DR InterPro; IPR034392; TatSF1-like_RRM1.
DR PANTHER; PTHR15608:SF0; HIV TAT-SPECIFIC FACTOR 1; 1.
DR PANTHER; PTHR15608; SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2; 1.
DR Pfam; PF14237; GYF_2; 1.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 2.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Reference proteome {ECO:0000313|Proteomes:UP000017836};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 263..350
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 394..479
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 124..161
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 202..254
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..138
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 506 AA; 56648 MW; 73CAEF023C5F710C CRC64;
MESRASLPIM ESGTVGAQGS DSNTVTEVGW YILGENQEHV GPYALSELQE HYLNGYITEN
TLLWSEGRSD WLPLSSIHEL VSAMSARIEE LGGQSQHYDN SVSESTFGAK DDFLQWKKEV
AEAEAEAENL KEDPFVAGGA DDRPSSPPDG EDEFTDDDGT TYKWDRSLRA WVPQDDSHSN
REHYGLDEMT YVQEQEVFPI LKDPDVSEGK EGNADLPKKK EGNTDGENVE TDSEKKRKEP
DTISDKKEAN KPPDSWFDLK VNTHVYVTGL PDDVTAEELV EVFSKCGVVK EDPDTRKPRV
KIYVDKETGK QKGDALVSYL KEPSVGLAIQ ILDGTPLRPG GKICMSVSQA KFEQKGDKFI
TKQQDKRKKK KLQRVQEKIL GWGGHDDKKL LIPLTIVLRH MFTPAELRSD PSLLPELELD
VFEECSKLGP VESVKICENH PQGVVLVKFK DRKDGLKCIE LMNGRWFGGK QIHASEDDGS
VNHAQVRDLD DDVARLEQFG AELEAD
//
