UniProt: V4KIX1

Database: UniProt
Entry: V4KIX1_EUTSA

LinkDB:  V4KIX1_EUTSA 
Original site:  V4KIX1_EUTSA

All links

Ontology (4)   
   GO (4)   
Gene (2)   
   KEGG GENES (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   EMBL (1)   
Protein domain (15)   
   InterPro (8)   
   Pfam (2)   
   PROSITE (4)   
   SMART (1)   
Literature (1)   
   PubMed (1)   
All databases (24)   

Download RDF

ID   V4KIX1_EUTSA            Unreviewed;      1962 AA.
AC   V4KIX1;
DT   22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT   22-JAN-2014, sequence version 1.
DT   27-MAR-2024, entry version 45.
DE   RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN   ORFNames=EUTSA_v10028358mg {ECO:0000313|EMBL:ESQ37790.1};
OS   Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX   NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ37790.1, ECO:0000313|Proteomes:UP000030689};
RN   [1] {ECO:0000313|EMBL:ESQ37790.1, ECO:0000313|Proteomes:UP000030689}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA   Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA   Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA   Mitchell-Olds T., Schumaker K.S., Wang X.;
RT   "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL   Front. Plant Sci. 4:46-46(2013).
CC   -!- SIMILARITY: Belongs to the VPS8 family.
CC       {ECO:0000256|ARBA:ARBA00009422}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; KI517537; ESQ37790.1; -; Genomic_DNA.
DR   RefSeq; XP_006396337.1; XM_006396274.1.
DR   STRING; 72664.V4KIX1; -.
DR   EnsemblPlants; ESQ37790; ESQ37790; EUTSA_v10028358mg.
DR   GeneID; 18014914; -.
DR   Gramene; ESQ37790; ESQ37790; EUTSA_v10028358mg.
DR   KEGG; eus:EUTSA_v10028358mg; -.
DR   eggNOG; KOG2079; Eukaryota.
DR   OMA; HQACGLI; -.
DR   OrthoDB; 120292at2759; -.
DR   Proteomes; UP000030689; Unassembled WGS sequence.
DR   GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
DR   GO; GO:0009555; P:pollen development; IEA:EnsemblPlants.
DR   GO; GO:0006623; P:protein targeting to vacuole; IEA:InterPro.
DR   GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
DR   InterPro; IPR045111; Vps41/Vps8.
DR   InterPro; IPR025941; Vps8_central_dom.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   InterPro; IPR001841; Znf_RING.
DR   PANTHER; PTHR12616; VACUOLAR PROTEIN SORTING VPS41; 1.
DR   PANTHER; PTHR12616:SF8; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 8 HOMOLOG; 1.
DR   Pfam; PF00637; Clathrin; 1.
DR   Pfam; PF12816; Vps8; 1.
DR   SMART; SM00320; WD40; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50236; CHCR; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Reference proteome {ECO:0000313|Proteomes:UP000030689};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}; Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT   REPEAT          512..546
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   DOMAIN          1762..1820
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   REGION          1..109
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          199..224
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          299..358
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1913..1962
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          1531..1558
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        27..42
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        66..80
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        299..324
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        325..354
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1914..1932
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1962 AA;  217262 MW;  FEB9EB61825E3589 CRC64;
     MELDLDSFLV SDSDSESDLD SSSVPHRTVD EILNASSSSS PSSSPPSSPP LIRDQVNRRN
     QNDPTRRLSE ALSNVSVRPE SVDSEVYRGF PRVSDPTRRN SPSTSSLRQL PLPSLFAGVR
     SNVKPGAALA AAVAASRLVP TPHAAIIKSR RASSASSELM QQVLGAGESV SNQDADDQEV
     FSTNGVSVGV AVGSVSVDEF RSSGGESRLE DEDNGAELAS QESEANVIEV QPSDSNVTVA
     DARDYEENSK PDLVTASYGV DAEGDVPAEQ ETMTTMEAEN AAVEGVTDDT VVVSLLESSG
     SQHLNDSDGN SSSYSQSGDA KASNDEESSV GDVKNDDLDR ITPDSKEEGV DAFIRDDGSS
     MSGISELVEE RIEELEKERM SKREKLKSRS FRKQLDLAEE FEKKQAYTGL HWEEGAAAQP
     MRLEGVKIGS TNLGYFDVDA NNLISGTISS QAFKRDHGSP QVLAVHLNFI AVGTSKGVIV
     VVPSKYSSDT ADQMESKLIW LGLQGDRSLS PVTSVCFNQQ GGLLLAGYGD GHVTVWDVQR
     ASVAKVITEH TAPVVYAFFI GRDSQGSRQF KVITSDTKGV VFKHTFSWTL LLNMYSVKTQ
     CLLDGQKNGM VLSASPLPDD IFGSSLASSK VGNTAVPSSS ISSMMGGVVG VDSSWKLFNE
     DSSAVEEGVV IFVTYQTGLV VKLIPNLEVY AQLPRPEGVR EGSMPYTAWK CSMENSSKEA
     EDRVSFLAIA WDRRVQVAKL VKSDLKEYAK WSLDSVAIGV VWLDDQLLVI PTVTGHLYLF
     TRDGVVIHQT NFSVDGSSGN DLISYHTYFT NVFGNPEKAY HNSVGVRGAS VYILGTAHLV
     ISRLLPWKER VDVLRRGGDW MGAFNMAMSL FNGQAHGVVD LPKTVDAIRE AIAPSLAELL
     LSYVDEVFSY ISIAFSNQIE KNGVTHEPSS GTKNANLEIE EQYNRVGGVA VEFCVHINRM
     DLLFDEIFSR FVAVQQRDTF LELLEPYILK DMLGSLPPEI MQALVEHYSR KGWLQRIEQC
     VLHMDISSLD FNQVVRICRE HGLYGALLYL FNKGLDDFRS PLEELLIVLR NSERQRATTI
     GYRMLVYLKY CFLGLAFPPG HGTLIPTRLP SLRTELIQFL LEKSNVHDSS TCVKSQRIYL
     NLYHLLEMDT EATLDVLRYA FAENEMVNHE NHLLESGEVS LESKTDSSMP EDGCNDMLIQ
     NLIDALVLVL DAGLNQPDES GDPDGSKSDK NWPSKEDRSH LFEFVAYYAA RGRVSIPKSI
     LAHILEYLTS DHILRTYNIS PKMRENQLLN LLKAVPETNW DAAYVSQLCE TAHFYKVCGY
     IHTIGRRYVA ALESYMKEAD EPLHSFCYVN KMLSQLRGDE FTAFHSAIIS RIPQLLELSR
     EGAFFLIIDN LKDNITRILE QLHSHPRSLF LYLKTVIEVH LSGSLEFSHL RKHEAVDSSG
     ENIRRDMPKE VEIYLEGLNG FPKFIQDNPV NVTDDMIELY VELLCKYEPK SVLRFLETFD
     SYRVEHCLRL CQEYGIIDAA AFLLERVGDA ASALSLTLSG LNEKFAELEN AVECLVSELM
     LGASEEASLE LFSSALELKE VHDIQGVLQA CIGLCQRNTP RLNPEESEIL WFRFLDTFCE
     PSMDSYQEPR NVNEIYKGLA DVKSLELPVD EAADTVKWRI PRSDAAGTHI LRKLISQFIK
     EIVEGMIGYV RLPTIMSKLL SDNGTQEFGD FKLTILGMLG TYGFERRILD TAKSLIEEDT
     FYTMSLLKKG ASHGYAPISL LCCICNCPLT KTFSTLRVRV FNCGHATHIQ CEPSENEMSS
     SSSSSSSSSI HVASSGCPVC MTKKTTQRSS KGKSFYLDYG LISTVSSSTG TSQRTSLYSH
     ENEMIDHSHS QQIPRFEILT NLQKDQRLVQ IESLPRLRLS PPAVYHEKVS RVSGFTPGES
     SGKDTKPVKP SQSGLSMKMK AKGSIFRPRL GKSVFSRPRV GN
//

DBGET integrated database retrieval system