ID V4M3Q7_EUTSA Unreviewed; 877 AA.
AC V4M3Q7;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 24-JAN-2024, entry version 37.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=EUTSA_v10020032mg {ECO:0000313|EMBL:ESQ49497.1};
OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ49497.1, ECO:0000313|Proteomes:UP000030689};
RN [1] {ECO:0000313|EMBL:ESQ49497.1, ECO:0000313|Proteomes:UP000030689}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA Mitchell-Olds T., Schumaker K.S., Wang X.;
RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL Front. Plant Sci. 4:46-46(2013).
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DR EMBL; KI517408; ESQ49497.1; -; Genomic_DNA.
DR RefSeq; XP_006408044.1; XM_006407981.1.
DR AlphaFoldDB; V4M3Q7; -.
DR STRING; 72664.V4M3Q7; -.
DR EnsemblPlants; ESQ49497; ESQ49497; EUTSA_v10020032mg.
DR GeneID; 18023921; -.
DR Gramene; ESQ49497; ESQ49497; EUTSA_v10020032mg.
DR KEGG; eus:EUTSA_v10020032mg; -.
DR eggNOG; KOG4430; Eukaryota.
DR OMA; FHHINSI; -.
DR OrthoDB; 411492at2759; -.
DR Proteomes; UP000030689; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd16574; RING-HC_Topors; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR47177; F18C1.6 PROTEIN; 1.
DR PANTHER; PTHR47177:SF3; F18C1.6 PROTEIN; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000030689};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 398..440
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 488..537
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..340
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 815..838
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 27..43
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..80
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 148..162
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 163..182
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 183..207
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..235
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 246..280
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 281..305
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 824..838
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 877 AA; 97908 MW; 7AA52F46858CC3D8 CRC64;
MGKRNTFGAR NSNTRVRSKD KGSDDSDEDY VISDEDEEES EADLKEYASS LDGEASCDGF
DGSDAVEDEE ELDEVEEEDV LLRNVEWPKV KTGPRGNRKI TGCKSRKMSQ VASDNEDVDL
DDADDDEEEI RNSRKVGGRS SVQEKHGGIG LGKRRRVFYE IEDEDGDYPE EDGEEEEERD
VRSEQVDLDG EMALEEQDNV SHETEKEDDG DYEGEDGDEE FTADEDVSLD EEEEEETIAC
NRKSLMVCRK NKRKQRSGRG RKRRKKCSVA KTRVTNGRKR RGKKTKEEVD DDGDFVDDCL
PARKKAKTKS SRPRRRCTVP SDSDIASSGE SEYEYTISEE EREQVREAGS LLRSSGNHVS
SIRQTTVKKD FPQLCKSPVK KAEKKVELVK RDVMKNVCGI CLSEEDMRRL KGTLDCCSHY
FCFTCIMEWS KVESRCPLCK QRFRTISKPA RSTPGVDLRE VVIPVPERDQ VYQPTEEELR
SYLDPYENTI CTECHQGEDD GHMLLCDLCD SSAHTYCVGL GMEVPEGNWY CEGCRPVALG
SASSETHTTS EQQRISGFNN RPSPLVVSGQ HQDASLLVSP RTSFFNGEFF FSPRLPNGDG
QVSSPSGLGA TTLSRRRTLH RHIQHIINSD RLSNMGSRIA GTSMIANSGD GFVTTQIGQY
GRERERSQPA VTQGAGTSLY AISEERLPNS NPLISVHDPE LLSPKLDHFG SEEAVRRLSS
NTFPGDRSID LGLRHGLAQA GPLFGNQHLP SYMPNTMPST VRERLQQRVI AHLKNLSSQI
DLGQATFDEI STCSIHTILA ACGLEHKSSE VHLVPPPVTC PHGDMTPGSS SSSSSNNSSS
SGLMKGCCYS CFDSFVEDVV KMILDTRQPH WLRLGLH
//
