ID V7AJU2_PHAVU Unreviewed; 1205 AA.
AC V7AJU2;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_011G089300g {ECO:0000313|EMBL:ESW04366.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW04366.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM002298; ESW04366.1; -; Genomic_DNA.
DR RefSeq; XP_007132372.1; XM_007132310.1.
DR AlphaFoldDB; V7AJU2; -.
DR STRING; 3885.V7AJU2; -.
DR EnsemblPlants; ESW04366; ESW04366; PHAVU_011G089300g.
DR GeneID; 18615607; -.
DR Gramene; ESW04366; ESW04366; PHAVU_011G089300g.
DR KEGG; pvu:PHAVU_011G089300g; -.
DR eggNOG; KOG1473; Eukaryota.
DR OMA; DTHKSAN; -.
DR OrthoDB; 450464at2759; -.
DR Proteomes; UP000000226; Chromosome 11.
DR GO; GO:0000785; C:chromatin; IEA:UniProt.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15532; PHD2_CHD_II; 1.
DR CDD; cd20401; Tudor_AtPTM-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR018501; DDT_dom.
DR InterPro; IPR047365; Tudor_AtPTM-like.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46508; PHD FINGER FAMILY PROTEIN; 1.
DR PANTHER; PTHR46508:SF1; PHD FINGER FAMILY PROTEIN; 1.
DR Pfam; PF02791; DDT; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF21743; PTM_DIR17_Tudor; 1.
DR Pfam; PF15612; WHIM1; 1.
DR SMART; SM00571; DDT; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS50827; DDT; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 188..248
FT /note="DDT"
FT /evidence="ECO:0000259|PROSITE:PS50827"
FT DOMAIN 411..458
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 138..182
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..28
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1205 AA; 134744 MW; FB3285F4E80ADF67 CRC64;
MEAPVARPRG RPRKRRRNDE ENETEAKKQA STGTRPVALV GRYVLKNFPR NGVFLGKVVY
YESGLYRVCY EDGDSEDLDS GEVRTILVKE GGMDGDLARR KEKLEELVSL KRPIESIKEE
SRAGLCELKD GGLMIEKDEE EDEEEEDGDV NSSSDSGTGL GMASGAEAET LPPPPELPVS
SGTVGVPEQC VSLVFSVYGF LRSFSIRLFL QPFTLDEFIG ALNYQVTNSL FDAIHLSLMR
VLRRHLEFLS SEGSERASRC LRCNEWSLLD PVTWPVFLLQ YLVVSGHTNS HEWEAFYKEV
STVEYYVLPV SRKLMILQIL CDDVLESEDI LNEMNTRRES EVGMDYDGED ILPTEFGVRR
VEPRYTYTSA CEDKEATKFV SASNAVNQPG SFISYSRHTE STEDGDVDRN GDECRLCGMD
GTLLCCDGCP SAYHSRCIGV LKNHIPEGPW YCPECKINMS EPTIAKGTTL RGAEIFGKDL
YGQLFMGTCE HLLVLNIGSA ESCLRYYNQN DIPKVLRVVY ASMQHRPIYH DICMAVLQYW
SVPESLLFHS VSSGANVNSA NRKEETKSSS FLLPPLGEGN LMKEEYPLTS VSTTYCDNKV
PSLDASSVSS QSSALQCNGN GSSIECLVVT TKLPEDSRME SILSADSASV SVSCHSNMNH
GNFDDRPTVV DPGKCSLVNS QFSYYGHAND TGCPINISFQ TKESTPATFE KCERNVTNGF
AYMGFSYKPL SYMNYYIHGE FAASAAAKFA LLSSEESRSE GHVSDNQRKL ASGNTYLQAK
AFSLSASRFF WPSSEKKPVE VPRERCGWCI SCKAPASSKR GCMLNHAALS ATKSAIKVLA
GFSPIRSVEG VLPSIATYII YMEECLRGLV VGPFLSSIYR RQWRKRVEQA TTFSAIKPLL
LELEENIRTI SFCGDWVKLM DDWLVEFSMV QSATSSLGTA QKRAPSGRRY KKRSAIDEAP
TDGCPESFVW WRGGKFTKFI FQKAILPKSM VRKAARQGGS RKISAISYAD GIDIPKRSRQ
LVWRAAVEMS RNASQLALQV RYLDFYLRWS DLIRPEQNIQ DGKGQETEAS AFRNANVCDT
KLVEGKNRYG IAFGSQKHLP SRVMKSVIEI EQDPEGKEKY WFSEARIPLY LVKEYEEGKG
NMPYNEEQHL NTASGLHKKR LKAICKDIFF YLTCKRDNLD VVSCSVCQMG VLIRDATKCN
ACQGT
//
