ID V7BBY5_PHAVU Unreviewed; 539 AA.
AC V7BBY5;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE RecName: Full=Zinc finger CCCH domain-containing protein 18-like {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_008G275800g {ECO:0000313|EMBL:ESW14378.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14378.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
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DR EMBL; CM002295; ESW14378.1; -; Genomic_DNA.
DR RefSeq; XP_007142384.1; XM_007142322.1.
DR AlphaFoldDB; V7BBY5; -.
DR STRING; 3885.V7BBY5; -.
DR EnsemblPlants; ESW14378; ESW14378; PHAVU_008G275800g.
DR GeneID; 18624229; -.
DR Gramene; ESW14378; ESW14378; PHAVU_008G275800g.
DR KEGG; pvu:PHAVU_008G275800g; -.
DR eggNOG; ENOG502QS3A; Eukaryota.
DR OrthoDB; 1214692at2759; -.
DR Proteomes; UP000000226; Chromosome 8.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR025605; OST-HTH/LOTUS_dom.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF50; TRANSCRIPTION FACTOR C3H FAMILY-RELATED; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51644; HTH_OST; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 175..202
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 226..310
FT /note="HTH OST-type"
FT /evidence="ECO:0000259|PROSITE:PS51644"
FT DOMAIN 329..404
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 175..202
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 503..539
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 505..521
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 539 AA; 61095 MW; 0CAD5FFB223D2D62 CRC64;
MDISQCTRIV FDKIHKFEPE HARKIIGYLL LKDHGELEMA KLASFPDYFI REVAFQAKRE
LLILSIPDML PISHILNPEQ CLSHLAVMSP RTPTSPSFHV PSLYWDPQPA GNINADFMAM
NYMDSIMELQ KQTQLCSLEN RIDAVKTSTV GVANDYYRDA SAANLGGKAR RRFSEFPMKV
CHYFNKGFCK HGTSCRFYHG QVAPENLSQM YGNDGVGEDQ VISPGSLAQL ESEIIELLRS
RGSPISIASL PMAYYDKYKK VLQADGYLTE SQRHGKSGYS LTKLLARLKN SILLIGSYRP
HGQHSVFLAE DAPTQMLEGE FARNISASRQ IYLTFPADSI FTEDDVSNYF NAFGPVADVR
IPNQQRRMFG FVTFVHSETV KAVLEKGNPH SVRGSRVLVK PYREKAKINE RNRIEHTVYY
SPRSVDTDSE LNSIPRSFGN PRSIRSQLIE DQDQEQTLEH ERRSFAQLQF SSIPLSTSPN
FGLSLDETNI SDDHFNFQPL EESFHGKSIH TDDKSSDEES YEGLNLPDSP FAFPIDSEM
//
