GenomeNet

Database: UniProt
Entry: V7BCQ3_PHAVU
LinkDB: V7BCQ3_PHAVU
Original site: V7BCQ3_PHAVU 
ID   V7BCQ3_PHAVU            Unreviewed;       439 AA.
AC   V7BCQ3;
DT   19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT   19-FEB-2014, sequence version 1.
DT   24-JAN-2024, entry version 39.
DE   RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN   ORFNames=PHAVU_007G088600g {ECO:0000313|EMBL:ESW15632.1};
OS   Phaseolus vulgaris (Kidney bean) (French bean).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX   NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW15632.1, ECO:0000313|Proteomes:UP000000226};
RN   [1] {ECO:0000313|Proteomes:UP000000226}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX   PubMed=24908249; DOI=10.1038/ng.3008;
RA   Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA   Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA   Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA   Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA   Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA   Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA   Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT   "A reference genome for common bean and genome-wide analysis of dual
RT   domestications.";
RL   Nat. Genet. 46:707-713(2014).
CC   -!- FUNCTION: Involved in the trafficking of vacuolar proteins. May
CC       function as a sorting receptor for protein trafficking to the protein
CC       storage vacuole (PSV). {ECO:0000256|ARBA:ARBA00037435}.
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004479}; Single-
CC       pass type I membrane protein {ECO:0000256|ARBA:ARBA00004479}.
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DR   EMBL; CM002294; ESW15632.1; -; Genomic_DNA.
DR   RefSeq; XP_007143638.1; XM_007143576.1.
DR   AlphaFoldDB; V7BCQ3; -.
DR   STRING; 3885.V7BCQ3; -.
DR   EnsemblPlants; ESW15632; ESW15632; PHAVU_007G088600g.
DR   GeneID; 18625315; -.
DR   Gramene; ESW15632; ESW15632; PHAVU_007G088600g.
DR   KEGG; pvu:PHAVU_007G088600g; -.
DR   eggNOG; KOG4628; Eukaryota.
DR   OMA; RIPTHKF; -.
DR   OrthoDB; 5474929at2759; -.
DR   PhylomeDB; V7BCQ3; -.
DR   Proteomes; UP000000226; Chromosome 7.
DR   GO; GO:0012505; C:endomembrane system; IEA:UniProt.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005773; C:vacuole; IEA:UniProtKB-KW.
DR   GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR   CDD; cd02123; PA_C_RZF_like; 1.
DR   Gene3D; 3.50.30.30; -; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR046450; PA_dom_sf.
DR   InterPro; IPR003137; PA_domain.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR044744; ZNRF4/RNF13/RNF167_PA.
DR   PANTHER; PTHR47168; RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED; 1.
DR   PANTHER; PTHR47168:SF1; RING-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF02225; PA; 1.
DR   Pfam; PF13639; zf-RING_2; 1.
DR   SMART; SM00184; RING; 1.
DR   SUPFAM; SSF52025; PA domain; 1.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   4: Predicted;
KW   Disulfide bond {ECO:0000256|ARBA:ARBA00023157};
KW   Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW   Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT   SIGNAL          1..21
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           22..439
FT                   /note="RING-type domain-containing protein"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5004756568"
FT   TRANSMEM        162..186
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          232..274
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   REGION          336..382
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   439 AA;  47841 MW;  88994BB128329176 CRC64;
     MGTLNLLFFF SLVSLCAMAA AKVVLIGNNI TLSFDDIEAN FAPTVKGSGQ YGVLYLAEPL
     DACTELTNKV ERLLNVSSPF ALVVRGGCSF EEKVRRAQKA GFEAVIVYDN EEDGVLVAMA
     GNSAGIRIHA VFVSKASGEI LKKYAGWTNV EIWLIPTFEN SAWSIMAISF ISLLAMSAVL
     ATCFFVRRHR IRRERPRGSL REFHGMSSRL VKAMPSLIFT AVLEDNCTSR TCAICLEDYC
     IGEKIRILPC CHKFHAICVD SWLTSWRTFC PVCKRDARTG LTEPPPSEST PLLSSSSAAS
     VLSSVRSSLA SSSAIQIART ASQTSSISRN HSIASTPHFH PSLRSSYHQS PSLSMSRSSV
     DLRNASQRSL ASHLNSPHSM GYPSLPSLNS RYMSPYIPSP SNASVSYLGS SSHQQHPLRY
     SESAASFSPF ASTHSLPEC
//
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