ID V7BCV0_PHAVU Unreviewed; 567 AA.
AC V7BCV0;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=USP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_008G270100g {ECO:0000313|EMBL:ESW14306.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14306.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|EMBL:ESW14306.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.;
RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM002295; ESW14306.1; -; Genomic_DNA.
DR EMBL; CM002295; ESW14307.1; -; Genomic_DNA.
DR RefSeq; XP_007142312.1; XM_007142250.1.
DR RefSeq; XP_007142313.1; XM_007142251.1.
DR AlphaFoldDB; V7BCV0; -.
DR STRING; 3885.V7BCV0; -.
DR EnsemblPlants; ESW14306; ESW14306; PHAVU_008G270100g.
DR EnsemblPlants; ESW14307; ESW14307; PHAVU_008G270100g.
DR GeneID; 18624172; -.
DR Gramene; ESW14306; ESW14306; PHAVU_008G270100g.
DR Gramene; ESW14307; ESW14307; PHAVU_008G270100g.
DR KEGG; pvu:PHAVU_008G270100g; -.
DR eggNOG; KOG2026; Eukaryota.
DR OMA; NKFVAER; -.
DR OrthoDB; 719409at2759; -.
DR Proteomes; UP000000226; Chromosome 8.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000245; P:spliceosomal complex assembly; IEA:InterPro.
DR CDD; cd02669; Peptidase_C19M; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR033809; USP39.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR001607; Znf_UBP.
DR PANTHER; PTHR21646:SF16; U4_U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 2; 1.
DR PANTHER; PTHR21646; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR Pfam; PF00443; UCH; 1.
DR Pfam; PF02148; zf-UBP; 1.
DR SMART; SM00290; ZnF_UBP; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50235; USP_3; 1.
DR PROSITE; PS50271; ZF_UBP; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00502}.
FT DOMAIN 110..207
FT /note="UBP-type"
FT /evidence="ECO:0000259|PROSITE:PS50271"
FT DOMAIN 232..566
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 1..46
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 69..102
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..30
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 567 AA; 65656 MW; 0F5A4E47B9862871 CRC64;
MTSKREREVV DRVEDKGLDN ESKRQKLDED SLSSPPPVSI ANPLSGLANN YADIDEEEEY
VQRERGSINE MRNDGSQHNG HRYGEADDSD KEDDSQLFSG RNNRQVEVRK DCPYLDTVNR
QVLDFDFEKF CSVSLSNLNV YACLVCGKYY QGRGKKSHAY THSLEAGHHV YINLRTEKVY
CLPDGYEIND PSLDDIRHVL NPRLTAKEVE QLDKNKQWSR ALDGSSYLPG MVGLNNIKET
DFVNVTIQSL MRVTPLRNFF LIPENYQHCK SPLVHRFGEL TRKVWHARNF KGQVSPHEFL
QAVMKASKKR FRIGAQSDPV EFMSWLLNTL HADLKTSKKN NSIIYDCFQG ELEVVKEIPN
KGAIDKKENN ENQNNAEKLL DGVNERHAFV KETSKMPFLM LGLDLPPPPL FKDVMEKNII
PQVPLFNILK KFDGETITEV VRPHIARMKY RVTRLPKYMI LHMRRFTKNN FFVEKNPTLV
NFPVKNLELK DYIPLPTPKE NEKLGSKYDL IANVVHDGKP GEGLYRVFVQ RKSEELWYEM
QDLHVSETLP HLVALSETYM QIYEQQS
//
