ID V7BNY7_PHAVU Unreviewed; 401 AA.
AC V7BNY7;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=alanine--glyoxylate transaminase {ECO:0000256|ARBA:ARBA00013049};
DE EC=2.6.1.44 {ECO:0000256|ARBA:ARBA00013049};
GN ORFNames=PHAVU_006G029100g {ECO:0000313|EMBL:ESW18296.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18296.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|EMBL:ESW18296.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.;
RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR000524-50, ECO:0000256|RuleBase:RU004504};
CC -!- SIMILARITY: Belongs to the class-V pyridoxal-phosphate-dependent
CC aminotransferase family. {ECO:0000256|ARBA:ARBA00009236,
CC ECO:0000256|RuleBase:RU004075}.
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DR EMBL; CM002293; ESW18296.1; -; Genomic_DNA.
DR EMBL; CM002293; ESW18297.1; -; Genomic_DNA.
DR RefSeq; XP_007146302.1; XM_007146240.1.
DR RefSeq; XP_007146303.1; XM_007146241.1.
DR AlphaFoldDB; V7BNY7; -.
DR STRING; 3885.V7BNY7; -.
DR EnsemblPlants; ESW18296; ESW18296; PHAVU_006G029100g.
DR EnsemblPlants; ESW18297; ESW18297; PHAVU_006G029100g.
DR GeneID; 18627607; -.
DR Gramene; ESW18296; ESW18296; PHAVU_006G029100g.
DR Gramene; ESW18297; ESW18297; PHAVU_006G029100g.
DR KEGG; pvu:PHAVU_006G029100g; -.
DR eggNOG; KOG2862; Eukaryota.
DR OMA; YEWDTPA; -.
DR OrthoDB; 1010571at2759; -.
DR Proteomes; UP000000226; Chromosome 6.
DR GO; GO:0008453; F:alanine-glyoxylate transaminase activity; IEA:UniProtKB-EC.
DR CDD; cd06451; AGAT_like; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR000192; Aminotrans_V_dom.
DR InterPro; IPR020578; Aminotrans_V_PyrdxlP_BS.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR InterPro; IPR024169; SP_NH2Trfase/AEP_transaminase.
DR PANTHER; PTHR21152:SF24; ALANINE--GLYOXYLATE AMINOTRANSFERASE 1; 1.
DR PANTHER; PTHR21152; AMINOTRANSFERASE CLASS V; 1.
DR Pfam; PF00266; Aminotran_5; 1.
DR PIRSF; PIRSF000524; SPT; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00595; AA_TRANSFER_CLASS_5; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR000524-50};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226}.
FT DOMAIN 67..299
FT /note="Aminotransferase class V"
FT /evidence="ECO:0000259|Pfam:PF00266"
FT BINDING 347
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR000524-1"
FT MOD_RES 201
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR000524-50"
SQ SEQUENCE 401 AA; 44210 MW; 43A3CAAABD7A6FCE CRC64;
MDYFNAPGRN HLFVPGPVNI PDQIIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTTG
IPFLIPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI DQQQRLKFNV DVVESDWGQG
AKLDVLESKI ASDTAHTIKA ICIVHNETAT GVTNNLAKVR QILDSYKHPA LLIVDGVSSI
CALDFRMDEW GVDVAITGSQ KALSLPTGIG IVVAGPRAIE ASKTAKSLRV FFDWKDYLKF
YQLGTYWPYT PSIHLLYGLR AALDLVFEEG LENVIARHNR LGTATRLAVE AWGLKNCTQK
EEWHSDTVTA VIVPSYIDSA EIVRRAWKRY NLSLGLGLNK VAGKVFRIGH LGYLNELQLL
GCLAGVEMIL QDVGYPVKLG SGVAAASAYF KNTIPLIPSR I
//