ID V9E7Q4_PHYPR Unreviewed; 544 AA.
AC V9E7Q4;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 13-SEP-2023, entry version 28.
DE RecName: Full=Rhamnogalacturonan endolyase {ECO:0008006|Google:ProtNLM};
GN ORFNames=F443_18951 {ECO:0000313|EMBL:ETI34573.1};
OS Phytophthora parasitica P1569.
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=1317065 {ECO:0000313|EMBL:ETI34573.1, ECO:0000313|Proteomes:UP000018721};
RN [1] {ECO:0000313|EMBL:ETI34573.1, ECO:0000313|Proteomes:UP000018721}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=P1569 {ECO:0000313|EMBL:ETI34573.1,
RC ECO:0000313|Proteomes:UP000018721};
RG The Broad Institute Genomics Platform;
RA Russ C., Tyler B., Panabieres F., Shan W., Tripathy S., Grunwald N.,
RA Machado M., Johnson C.S., Arredondo F., Hong C., Coffey M., Young S.K.,
RA Zeng Q., Gargeya S., Fitzgerald M., Abouelleil A., Alvarado L.,
RA Chapman S.B., Gainer-Dewar J., Goldberg J., Griggs A., Gujja S., Hansen M.,
RA Howarth C., Imamovic A., Ireland A., Larimer J., McCowan C., Murphy C.,
RA Pearson M., Poon T.W., Priest M., Roberts A., Saif S., Shea T., Sykes S.,
RA Wortman J., Nusbaum C., Birren B.;
RT "The Genome Sequence of Phytophthora parasitica P1569.";
RL Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ETI34573.1}.
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DR EMBL; ANIZ01003312; ETI34573.1; -; Genomic_DNA.
DR AlphaFoldDB; V9E7Q4; -.
DR EnsemblProtists; ETI34573; ETI34573; F443_18951.
DR eggNOG; ENOG502QTKY; Eukaryota.
DR HOGENOM; CLU_037882_1_1_1; -.
DR OrthoDB; 70305at2759; -.
DR Proteomes; UP000018721; Unassembled WGS sequence.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0016837; F:carbon-oxygen lyase activity, acting on polysaccharides; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR GO; GO:1901575; P:organic substance catabolic process; IEA:UniProt.
DR CDD; cd10317; RGL4_C; 1.
DR CDD; cd10320; RGL4_N; 1.
DR Gene3D; 2.70.98.10; -; 1.
DR Gene3D; 2.60.40.1120; Carboxypeptidase-like, regulatory domain; 1.
DR Gene3D; 2.60.120.260; Galactose-binding domain-like; 1.
DR InterPro; IPR011013; Gal_mutarotase_sf_dom.
DR InterPro; IPR008979; Galactose-bd-like_sf.
DR InterPro; IPR014718; GH-type_carb-bd.
DR InterPro; IPR029413; RG-lyase_II.
DR InterPro; IPR029411; RG-lyase_III.
DR InterPro; IPR016590; Rhamnogalacturonase_B.
DR InterPro; IPR015364; RhgB_N.
DR PANTHER; PTHR36574; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR PANTHER; PTHR36574:SF1; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR Pfam; PF14683; CBM-like; 1.
DR Pfam; PF14686; fn3_3; 1.
DR Pfam; PF09284; RhgB_N; 1.
DR SUPFAM; SSF74650; Galactose mutarotase-like; 1.
DR SUPFAM; SSF49785; Galactose-binding domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000018721};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..25
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 26..544
FT /note="Rhamnogalacturonan endolyase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004773938"
FT DOMAIN 29..279
FT /note="Rhamnogalacturonase B N-terminal"
FT /evidence="ECO:0000259|Pfam:PF09284"
FT DOMAIN 286..362
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14686"
FT DOMAIN 376..543
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14683"
SQ SEQUENCE 544 AA; 58230 MW; A09175A689F6F78C CRC64;
MLCRLFAAAL VVSTVLTAAP PTVSAAASFG YSTGSDKYVV STGKGLTVTM KQSTCDITSI
NYNGKELQYK SKATHVNSGL GKVTSSIKTL SDSKKTIRVI CKKTGLEQTY LFRPNENVIY
MGTYHAKDLV LPELRFLARL DKSAVNTGIT EATIESGMTA IEAEDVMQNS KGLTRSKYYS
GVPFIDNAVY GVKGKSVGAY FVISDLGYET SSGGPFFRDI NNKLDVSNEL TFYMNSDHTR
TEDYRYGFHG PYALTFTSGA APPASSLDFN FFQDLGLTGF VPSAKRGKMA GTITDSKNVL
GNSDVVVGFS NAAAQYWVKV AAGKKTFTSP LMKAGRYTAT VYKKQLAVGT ASVLINAGAT
KTQSITVSYN MTSNPIWRIG EWDGTPGGFL NADKIHKMHP SDYRMSAWKA LTFKAGSDAD
SAFPMAQFRG VNDPITISFS LTAAQAKVSR TLKIGITLAQ SSGRSSVTVN SKWTAPVPAS
VAVKTRGVTR GVVVGNYKLY EYVIPASALV TGTNSIKLTV ASGATDPSEK FLAASVVFDA
LELV
//
