ID W1PN30_AMBTC Unreviewed; 486 AA.
AC W1PN30;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 24-JAN-2024, entry version 43.
DE RecName: Full=Diaminopimelate decarboxylase {ECO:0008006|Google:ProtNLM};
GN ORFNames=AMTR_s00014p00128310 {ECO:0000313|EMBL:ERN09121.1};
OS Amborella trichopoda.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella.
OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN09121.1, ECO:0000313|Proteomes:UP000017836};
RN [1] {ECO:0000313|Proteomes:UP000017836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24357323;
RG Amborella Genome Project;
RT "The Amborella genome and the evolution of flowering plants.";
RL Science 342:1241089-1241089(2013).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
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DR EMBL; KI393051; ERN09121.1; -; Genomic_DNA.
DR RefSeq; XP_006847540.1; XM_006847477.2.
DR AlphaFoldDB; W1PN30; -.
DR STRING; 13333.W1PN30; -.
DR EnsemblPlants; ERN09121; ERN09121; AMTR_s00014p00128310.
DR GeneID; 18437261; -.
DR Gramene; ERN09121; ERN09121; AMTR_s00014p00128310.
DR KEGG; atr:18437261; -.
DR eggNOG; KOG0622; Eukaryota.
DR HOGENOM; CLU_026444_0_0_1; -.
DR OMA; YCRSMAS; -.
DR OrthoDB; 317547at2759; -.
DR Proteomes; UP000017836; Unassembled WGS sequence.
DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IBA:GO_Central.
DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IBA:GO_Central.
DR CDD; cd06828; PLPDE_III_DapDC; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR HAMAP; MF_02120; LysA; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR002986; DAP_deCOOHase_LysA.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022657; De-COase2_CS.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR022653; De-COase2_pyr-phos_BS.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR NCBIfam; TIGR01048; lysA; 1.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01181; DAPDCRBXLASE.
DR PRINTS; PR01179; ODADCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
DR PROSITE; PS00878; ODR_DC_2_1; 1.
DR PROSITE; PS00879; ODR_DC_2_2; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000256|ARBA:ARBA00023239};
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50};
KW Reference proteome {ECO:0000313|Proteomes:UP000017836}.
FT DOMAIN 103..350
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 351..441
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 414
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 128
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 486 AA; 53951 MW; 845B7635F30A4BEF CRC64;
MAASHLSHSA PHSLSFSKPL QNPTKLTFYS HFSLPKAQRR RLSLQAVLSE NLPKVSSPIK
TRNRKFHHCF SKSEDGFLYC EKLKVQEIME AVEKRPFYLY SKDQITRNFE AYMNALEGLD
YIIGYAIKAN NNLKILEHLR GLGCGAVLVS GNELKLALHA GFDPTKCVFN GNGKLLEDLV
LAAEKGVFVN VDSEFDLENI VTAARIAGKR VPVLLRINPD VDPQVHPYVA TGNKNSKFGI
RNEKLQWFLD AAKSHPNELK LVGAHCHLGS TITKVDIFRD AALLMVNYID EIRAQGFEIS
YLNIGGGLGI DYHHTGAVLP TPMDLINTVR ELVLSRGLNL IIEPGRSLIA NTCCLVNRIT
GVKTNGTKNF IVIDGSMAEL IRPSLYGAYQ HIELVSPPAP DTEVSTFDVV GPVCESADFL
GKDRELPTPS KGAGLVVHDA GAYCMSMAST YNLKMRPPEY WVEDGSIVKI RHEETFEDHL
RFYEGL
//