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Database: UniProt
Entry: W1PN30_AMBTC
LinkDB: W1PN30_AMBTC
Original site: W1PN30_AMBTC 
ID   W1PN30_AMBTC            Unreviewed;       486 AA.
AC   W1PN30;
DT   19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT   19-MAR-2014, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   RecName: Full=Diaminopimelate decarboxylase {ECO:0008006|Google:ProtNLM};
GN   ORFNames=AMTR_s00014p00128310 {ECO:0000313|EMBL:ERN09121.1};
OS   Amborella trichopoda.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella.
OX   NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN09121.1, ECO:0000313|Proteomes:UP000017836};
RN   [1] {ECO:0000313|Proteomes:UP000017836}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=24357323;
RG   Amborella Genome Project;
RT   "The Amborella genome and the evolution of flowering plants.";
RL   Science 342:1241089-1241089(2013).
CC   -!- COFACTOR:
CC       Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC         Evidence={ECO:0000256|ARBA:ARBA00001933,
CC         ECO:0000256|PIRSR:PIRSR600183-50};
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DR   EMBL; KI393051; ERN09121.1; -; Genomic_DNA.
DR   RefSeq; XP_006847540.1; XM_006847477.2.
DR   AlphaFoldDB; W1PN30; -.
DR   STRING; 13333.W1PN30; -.
DR   EnsemblPlants; ERN09121; ERN09121; AMTR_s00014p00128310.
DR   GeneID; 18437261; -.
DR   Gramene; ERN09121; ERN09121; AMTR_s00014p00128310.
DR   KEGG; atr:18437261; -.
DR   eggNOG; KOG0622; Eukaryota.
DR   HOGENOM; CLU_026444_0_0_1; -.
DR   OMA; YCRSMAS; -.
DR   OrthoDB; 317547at2759; -.
DR   Proteomes; UP000017836; Unassembled WGS sequence.
DR   GO; GO:0008836; F:diaminopimelate decarboxylase activity; IBA:GO_Central.
DR   GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IBA:GO_Central.
DR   CDD; cd06828; PLPDE_III_DapDC; 1.
DR   Gene3D; 3.20.20.10; Alanine racemase; 1.
DR   HAMAP; MF_02120; LysA; 1.
DR   InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR   InterPro; IPR002986; DAP_deCOOHase_LysA.
DR   InterPro; IPR022643; De-COase2_C.
DR   InterPro; IPR022657; De-COase2_CS.
DR   InterPro; IPR022644; De-COase2_N.
DR   InterPro; IPR022653; De-COase2_pyr-phos_BS.
DR   InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR   InterPro; IPR029066; PLP-binding_barrel.
DR   NCBIfam; TIGR01048; lysA; 1.
DR   PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR   PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR   Pfam; PF02784; Orn_Arg_deC_N; 1.
DR   Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR   PRINTS; PR01181; DAPDCRBXLASE.
DR   PRINTS; PR01179; ODADCRBXLASE.
DR   SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR   SUPFAM; SSF51419; PLP-binding barrel; 1.
DR   PROSITE; PS00878; ODR_DC_2_1; 1.
DR   PROSITE; PS00879; ODR_DC_2_2; 1.
PE   3: Inferred from homology;
KW   Lyase {ECO:0000256|ARBA:ARBA00023239};
KW   Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50};
KW   Reference proteome {ECO:0000313|Proteomes:UP000017836}.
FT   DOMAIN          103..350
FT                   /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF02784"
FT   DOMAIN          351..441
FT                   /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF00278"
FT   ACT_SITE        414
FT                   /note="Proton donor"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT   MOD_RES         128
FT                   /note="N6-(pyridoxal phosphate)lysine"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ   SEQUENCE   486 AA;  53951 MW;  845B7635F30A4BEF CRC64;
     MAASHLSHSA PHSLSFSKPL QNPTKLTFYS HFSLPKAQRR RLSLQAVLSE NLPKVSSPIK
     TRNRKFHHCF SKSEDGFLYC EKLKVQEIME AVEKRPFYLY SKDQITRNFE AYMNALEGLD
     YIIGYAIKAN NNLKILEHLR GLGCGAVLVS GNELKLALHA GFDPTKCVFN GNGKLLEDLV
     LAAEKGVFVN VDSEFDLENI VTAARIAGKR VPVLLRINPD VDPQVHPYVA TGNKNSKFGI
     RNEKLQWFLD AAKSHPNELK LVGAHCHLGS TITKVDIFRD AALLMVNYID EIRAQGFEIS
     YLNIGGGLGI DYHHTGAVLP TPMDLINTVR ELVLSRGLNL IIEPGRSLIA NTCCLVNRIT
     GVKTNGTKNF IVIDGSMAEL IRPSLYGAYQ HIELVSPPAP DTEVSTFDVV GPVCESADFL
     GKDRELPTPS KGAGLVVHDA GAYCMSMAST YNLKMRPPEY WVEDGSIVKI RHEETFEDHL
     RFYEGL
//
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