ID W5CWG7_WHEAT Unreviewed; 492 AA.
AC W5CWG7;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Matrin-type domain-containing protein {ECO:0000259|PROSITE:PS50171};
GN ORFNames=CFC21_041924 {ECO:0000313|EMBL:KAF7030382.1},
GN TRAES_3BF055800020CFD_c1 {ECO:0000313|EMBL:CDM83913.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM83913.1};
RN [1] {ECO:0000313|EMBL:CDM83913.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=25035497; DOI=10.1126/science.1249721;
RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J.,
RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S.,
RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., Poulain J.,
RA Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., Rogers J.,
RA Vandepoele K., Aury J.M., Mayer K., Berges H., Quesneville H., Wincker P.,
RA Feuillet C.;
RT "Structural and functional partitioning of bread wheat chromosome 3B.";
RL Science 345:1249721-1249721(2014).
RN [2] {ECO:0000313|EMBL:KAF7030382.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7030382.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS3B02G299500.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS3B02G299500.1};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [4] {ECO:0000313|EnsemblPlants:TraesCS3B02G299500.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [5] {ECO:0000313|EMBL:KAF7030382.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7030382.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SF3A3 family.
CC {ECO:0000256|ARBA:ARBA00008776}.
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DR EMBL; HG670306; CDM83913.1; -; Genomic_DNA.
DR EMBL; CM022218; KAF7030382.1; -; Genomic_DNA.
DR STRING; 4565.W5CWG7; -.
DR PaxDb; 4565-Traes_3B_6550C61B1-1; -.
DR EnsemblPlants; TraesCS3B02G299500.1; TraesCS3B02G299500.1; TraesCS3B02G299500.
DR Gramene; TraesCS3B02G299500.1; TraesCS3B02G299500.1; TraesCS3B02G299500.
DR Gramene; TraesCS3B03G0771400.1; TraesCS3B03G0771400.1.CDS; TraesCS3B03G0771400.
DR Gramene; TraesKAR3B01G0325800.1; cds.TraesKAR3B01G0325800.1; TraesKAR3B01G0325800.
DR Gramene; TraesPAR_scaffold_136499_01G000100.1; TraesPAR_scaffold_136499_01G000100.1; TraesPAR_scaffold_136499_01G000100.
DR Gramene; TraesRN3B0100768200.1; TraesRN3B0100768200.1; TraesRN3B0100768200.
DR Gramene; TraesROB_scaffold_039216_01G000100.1; TraesROB_scaffold_039216_01G000100.1; TraesROB_scaffold_039216_01G000100.
DR eggNOG; KOG2636; Eukaryota.
DR HOGENOM; CLU_027160_1_0_1; -.
DR OMA; KSSERWQ; -.
DR OrthoDB; 5483967at2759; -.
DR Proteomes; UP000019116; Chromosome 3B.
DR Proteomes; UP000815260; Chromosome 3B.
DR GO; GO:0005681; C:spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR000690; Matrin/U1-C_Znf_C2H2.
DR InterPro; IPR025086; SDE2-like_C_dom.
DR InterPro; IPR031774; SF3A3_dom.
DR InterPro; IPR024598; SF3a60/Prp9_C.
DR InterPro; IPR021966; SF3a60_bindingd.
DR PANTHER; PTHR12786:SF2; SPLICING FACTOR 3A SUBUNIT 3; 1.
DR PANTHER; PTHR12786; SPLICING FACTOR SF3A-RELATED; 1.
DR Pfam; PF13297; SDE2_2C; 1.
DR Pfam; PF16837; SF3A3; 1.
DR Pfam; PF12108; SF3a60_bindingd; 1.
DR Pfam; PF11931; SF3a60_Prp9_C; 1.
DR PROSITE; PS50171; ZF_MATRIN; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116}.
FT DOMAIN 397..428
FT /note="Matrin-type"
FT /evidence="ECO:0000259|PROSITE:PS50171"
FT REGION 346..366
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 346..365
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 492 AA; 58055 MW; 476CAFBBD7AA59C8 CRC64;
MASSVLEATR AAHEDLERLE RLAVRELQRD PANARDRLFQ SHRVRHMLDL VVSTSDKLVE
IYEDKDGARK DEISTHLTAP VQSDIFPKYY ERLKEIRDYH RRNHSARFVS ETDDYEELLK
EEPAIEFTGE EAFGRYLDLH ELYNEFINSK FGSLMEYSAY VGTFAQTEKI AHNLKATRPY
KEYLEHILEY LMSFLYRTEP LQDIEKIFTK LESEFEEQWT NGEVPGWENK GTEKESVLQE
SAVDLDYYST VEELVELGPE KLKEALTARG LKGGGTVQQR AERLFLLKHT PLEKLDRKHF
AKGDDLKKEI ALIEMKMKRL CEILDEVIVR TKENAEKKLT LTYEEMEAER EEEEVQADSE
SDDEDQQIYN PLKLPMGWDG KPIPYWLYKL HGLGQEFKCE ICGNHSYWGR RAYERHFKEW
RHQHGMRCLG IPNTKNFNEI TSIKEATALW ERIQAKQGQN KWRPDLEEEY EDKDGNIYNK
KTYTDLQRQG LI
//
