GenomeNet

Database: UniProt
Entry: W5M407_LEPOC
LinkDB: W5M407_LEPOC
Original site: W5M407_LEPOC 
ID   W5M407_LEPOC            Unreviewed;       605 AA.
AC   W5M407;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   16-APR-2014, sequence version 1.
DT   24-JAN-2024, entry version 52.
DE   SubName: Full=Autophagy related 16 like 2 {ECO:0000313|Ensembl:ENSLOCP00000003115.1};
OS   Lepisosteus oculatus (Spotted gar).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC   Lepisosteus.
OX   NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000003115.1, ECO:0000313|Proteomes:UP000018468};
RN   [1] {ECO:0000313|Proteomes:UP000018468}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA   MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT   "The Draft Genome of Lepisosteus oculatus.";
RL   Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSLOCP00000003115.1}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC       {ECO:0000256|ARBA:ARBA00009271}.
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DR   EMBL; AHAT01003274; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_006628035.2; XM_006627972.2.
DR   AlphaFoldDB; W5M407; -.
DR   Ensembl; ENSLOCT00000003122.1; ENSLOCP00000003115.1; ENSLOCG00000002627.1.
DR   GeneID; 102691392; -.
DR   KEGG; loc:102691392; -.
DR   CTD; 89849; -.
DR   GeneTree; ENSGT00940000153936; -.
DR   HOGENOM; CLU_000288_57_10_1; -.
DR   OrthoDB; 458014at2759; -.
DR   Proteomes; UP000018468; Linkage group LG3.
DR   Bgee; ENSLOCG00000002627; Expressed in pharyngeal gill and 13 other cell types or tissues.
DR   GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR   GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR   GO; GO:0006807; P:nitrogen compound metabolic process; IEA:UniProt.
DR   GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR   CDD; cd22887; Atg16_CCD; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR   InterPro; IPR045160; ATG16.
DR   InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR   PANTHER; PTHR19878:SF7; PROTEIN ATG16L2; 1.
DR   Pfam; PF08614; ATG16; 1.
DR   Pfam; PF00400; WD40; 6.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 3.
DR   PROSITE; PS50082; WD_REPEATS_2; 4.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   DOMAIN          25..203
FT                   /note="Autophagy-related protein 16"
FT                   /evidence="ECO:0000259|Pfam:PF08614"
FT   REPEAT          316..357
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          360..394
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          402..443
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          540..569
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          1..23
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          232..267
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          128..176
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        244..260
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   605 AA;  67537 MW;  C44BABB1EA430A7B CRC64;
     MMADARRAHS AGSAPKRAAD SWKRHIARQL KQRDLAQKIM FQDVIRSYMV LLEKFKQKDQ
     ITRRLLGSAE RCLPDSVSKN SSEMAVVQHE DQVTYLQKIG RELAYEVVDL QKSVRIKDSS
     LVGQRGRMSE LKRRLGAVES ECRSLRARVA EVQEGNRALK REYDSLLEQH RRMDETYRRE
     EVRGSELLED LIKGKELAAE SMNSKNERRV QARAATLKKE LETAVKKKVN IDIGSGNTQP
     TKRGALKEEV EEKAEKRPTR SFRSASATSP RILESIKELF EMRKRGSSVS SLEEDLCVPV
     GVCVVARVPA KALHVLDAHE LGINAVKFSS SSKLLATGGT DRVIKVWDIK AGRMHSRGTL
     GGSNEGITSI EFDPTGTKIL AASYDNSALF WKLDDCVPKL TLTGHSRKVT AAKFKCSLRQ
     VVTGSADRTV KIWDLHRPAC IRTIDVSSYC SDVVCSEYFI VSGHYDKKIR FWDSRASSCT
     QEVPAQGKVT SLDISLDHRQ LLTCSRDESL QVMDLRMNNA RMSFRADGFK CGSDSTKAIF
     SPDGSYVTAG SADGAVYIWN VNSGHLETCL SDMHCSSINA VSWSLSGEFV VSVDKSRRAV
     LWSDI
//
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