ID W5M407_LEPOC Unreviewed; 605 AA.
AC W5M407;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 24-JAN-2024, entry version 52.
DE SubName: Full=Autophagy related 16 like 2 {ECO:0000313|Ensembl:ENSLOCP00000003115.1};
OS Lepisosteus oculatus (Spotted gar).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC Lepisosteus.
OX NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000003115.1, ECO:0000313|Proteomes:UP000018468};
RN [1] {ECO:0000313|Proteomes:UP000018468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT "The Draft Genome of Lepisosteus oculatus.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSLOCP00000003115.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC {ECO:0000256|ARBA:ARBA00009271}.
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DR EMBL; AHAT01003274; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_006628035.2; XM_006627972.2.
DR AlphaFoldDB; W5M407; -.
DR Ensembl; ENSLOCT00000003122.1; ENSLOCP00000003115.1; ENSLOCG00000002627.1.
DR GeneID; 102691392; -.
DR KEGG; loc:102691392; -.
DR CTD; 89849; -.
DR GeneTree; ENSGT00940000153936; -.
DR HOGENOM; CLU_000288_57_10_1; -.
DR OrthoDB; 458014at2759; -.
DR Proteomes; UP000018468; Linkage group LG3.
DR Bgee; ENSLOCG00000002627; Expressed in pharyngeal gill and 13 other cell types or tissues.
DR GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:UniProt.
DR GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR CDD; cd22887; Atg16_CCD; 1.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR PANTHER; PTHR19878:SF7; PROTEIN ATG16L2; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 6.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 25..203
FT /note="Autophagy-related protein 16"
FT /evidence="ECO:0000259|Pfam:PF08614"
FT REPEAT 316..357
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 360..394
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 402..443
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 540..569
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 232..267
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 128..176
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 244..260
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 605 AA; 67537 MW; C44BABB1EA430A7B CRC64;
MMADARRAHS AGSAPKRAAD SWKRHIARQL KQRDLAQKIM FQDVIRSYMV LLEKFKQKDQ
ITRRLLGSAE RCLPDSVSKN SSEMAVVQHE DQVTYLQKIG RELAYEVVDL QKSVRIKDSS
LVGQRGRMSE LKRRLGAVES ECRSLRARVA EVQEGNRALK REYDSLLEQH RRMDETYRRE
EVRGSELLED LIKGKELAAE SMNSKNERRV QARAATLKKE LETAVKKKVN IDIGSGNTQP
TKRGALKEEV EEKAEKRPTR SFRSASATSP RILESIKELF EMRKRGSSVS SLEEDLCVPV
GVCVVARVPA KALHVLDAHE LGINAVKFSS SSKLLATGGT DRVIKVWDIK AGRMHSRGTL
GGSNEGITSI EFDPTGTKIL AASYDNSALF WKLDDCVPKL TLTGHSRKVT AAKFKCSLRQ
VVTGSADRTV KIWDLHRPAC IRTIDVSSYC SDVVCSEYFI VSGHYDKKIR FWDSRASSCT
QEVPAQGKVT SLDISLDHRQ LLTCSRDESL QVMDLRMNNA RMSFRADGFK CGSDSTKAIF
SPDGSYVTAG SADGAVYIWN VNSGHLETCL SDMHCSSINA VSWSLSGEFV VSVDKSRRAV
LWSDI
//