GenomeNet

Database: UniProt
Entry: W5MSH2_LEPOC
LinkDB: W5MSH2_LEPOC
Original site: W5MSH2_LEPOC 
ID   W5MSH2_LEPOC            Unreviewed;       623 AA.
AC   W5MSH2;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   16-APR-2014, sequence version 1.
DT   24-JAN-2024, entry version 53.
DE   SubName: Full=Autophagy related 16 like 1 {ECO:0000313|Ensembl:ENSLOCP00000011331.1};
OS   Lepisosteus oculatus (Spotted gar).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC   Lepisosteus.
OX   NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000011331.1, ECO:0000313|Proteomes:UP000018468};
RN   [1] {ECO:0000313|Proteomes:UP000018468}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA   MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT   "The Draft Genome of Lepisosteus oculatus.";
RL   Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSLOCP00000011331.1}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC       {ECO:0000256|ARBA:ARBA00009271}.
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DR   EMBL; AHAT01012921; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_015217039.1; XM_015361553.1.
DR   AlphaFoldDB; W5MSH2; -.
DR   STRING; 7918.ENSLOCP00000011331; -.
DR   Ensembl; ENSLOCT00000011347.1; ENSLOCP00000011331.1; ENSLOCG00000009283.1.
DR   GeneID; 102693910; -.
DR   CTD; 55054; -.
DR   eggNOG; KOG0288; Eukaryota.
DR   GeneTree; ENSGT00940000153936; -.
DR   InParanoid; W5MSH2; -.
DR   OMA; GRPCISP; -.
DR   OrthoDB; 458014at2759; -.
DR   Proteomes; UP000018468; Linkage group LG14.
DR   Bgee; ENSLOCG00000009283; Expressed in bone element and 13 other cell types or tissues.
DR   GO; GO:0000421; C:autophagosome membrane; IBA:GO_Central.
DR   GO; GO:0000045; P:autophagosome assembly; IBA:GO_Central.
DR   GO; GO:0039689; P:negative stranded viral RNA replication; IBA:GO_Central.
DR   CDD; cd22887; Atg16_CCD; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 1.20.5.170; -; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR   InterPro; IPR045160; ATG16.
DR   InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR   PANTHER; PTHR19878:SF6; AUTOPHAGY-RELATED PROTEIN 16-1; 1.
DR   Pfam; PF08614; ATG16; 1.
DR   Pfam; PF00400; WD40; 6.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 3.
DR   PROSITE; PS50082; WD_REPEATS_2; 5.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 5.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   DOMAIN          15..205
FT                   /note="Autophagy-related protein 16"
FT                   /evidence="ECO:0000259|Pfam:PF08614"
FT   REPEAT          334..375
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          378..419
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          420..461
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          556..587
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          589..623
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          246..279
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          294..316
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          28..55
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          95..229
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        255..279
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   623 AA;  70103 MW;  394BA10393CA3478 CRC64;
     MSGVRFRAEC SWKRHIAEQL KHRDRVQRQA FEEIIQQYNR LLEKADLQAV LAERRQTEKY
     DIQNRHDLSP GADGGRSETL VQEMSQIRIK HQEELTELHK KRGELAQNVI ELNNQMQQKD
     KEIQANEAKM LEYQQQIAQL EGECRELRSS LQDLERANQT LKDEYDALQI TFSALEEKLR
     RTTEENQELI SRWMAEKAQE ANRLNAENEK DCRRRQAKLQ KELAEAAKEP LPIDQDDDIE
     VLPEEAAEQA GDTSPTRGAC RTPSKRNSQQ PPGGLLDSIS NIFGLSESPI LGHHISDRSR
     RRSLNSFGSS PENAEAHTGV CVEVRVPTTP LHVFDAHDGE VNAVRFSPGS RLMATGGMDR
     KVKLWEVISG HCELKGTLTG SNAGITSIEF DSAGSYLLAA SNDFASRIWT VDDQRLRHTL
     TGHSGKVLSA RFLLDNARIV SGSYDRTLKL WDLRSKVCIK TVFAGSSCND IVCTEQCVMS
     GHFDKKVRYW DIRAESIVRE LELHGRVTSL DLNAERTELL ACSRDDLIKI IDLRTNAVRQ
     TFSVQGFKCG SDWTRVTFSP DGSYIAAGSA DGTLYVWNVL TGKLDRTLGK HHSSTINAVA
     WSPSGTYVVS VEKGSKAVLW SDL
//
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