ID W6TQJ3_9SPHI Unreviewed; 306 AA.
AC W6TQJ3;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=RNA polymerase sigma-70 region 4 domain-containing protein {ECO:0000259|Pfam:PF04545};
GN ORFNames=N824_26500 {ECO:0000313|EMBL:ETZ21790.1};
OS Pedobacter sp. V48.
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Pedobacter.
OX NCBI_TaxID=509635 {ECO:0000313|EMBL:ETZ21790.1, ECO:0000313|Proteomes:UP000019145};
RN [1] {ECO:0000313|EMBL:ETZ21790.1, ECO:0000313|Proteomes:UP000019145}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=V48 {ECO:0000313|EMBL:ETZ21790.1,
RC ECO:0000313|Proteomes:UP000019145};
RX PubMed=24578271;
RA Bitzer A.S., Garbeva P., Silby M.W.;
RT "Draft Genome Sequence of Pedobacter sp. Strain V48, Isolated from a
RT Coastal Sand Dune in the Netherlands.";
RL Genome Announc. 2:e00094-e00014(2014).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ETZ21790.1}.
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DR EMBL; AWRU01000015; ETZ21790.1; -; Genomic_DNA.
DR AlphaFoldDB; W6TQJ3; -.
DR STRING; 509635.N824_26500; -.
DR PATRIC; fig|509635.5.peg.3170; -.
DR eggNOG; COG1595; Bacteria.
DR Proteomes; UP000019145; Unassembled WGS sequence.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR43133:SF46; ECF RNA POLYMERASE SIGMA FACTOR SIGG; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
FT DOMAIN 258..302
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
SQ SEQUENCE 306 AA; 36465 MW; 4642652280E885C2 CRC64;
MGSVVIPFLK VSEPCSAEDR AHYSIALNTR EDSYKIRAMK YNRLTENQHY FDKFSQGDEK
GFEYFYNCLY PSLFYKRMRY IKDDTNAACI VSEAFLRLWL IRNSITNPNH IETFLRDTTF
DACKAYYRTS KHNFQRNMLR LDEIENYQEF IGGYDPEEEL DQDDILYQEE LDDHLKLQWQ
QVEAVIANLT ENQQLFIKLC LKYAFNYERI AWHIGGISDY QVARTVEKTL ETLKSILTSS
QKLEVTGKTH KFKFEGDLCE EQSRVLHMRY ELQYSFEEIA RLLNLSQQHI QRTFAQACTK
IKRIKK
//
