ID W7QCP7_9ALTE Unreviewed; 478 AA.
AC W7QCP7;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE SubName: Full=Sigma-54 dependent transcription regulator {ECO:0000313|EMBL:EWH09686.1};
GN ORFNames=DS2_11158 {ECO:0000313|EMBL:EWH09686.1};
OS Catenovulum agarivorans DS-2.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Alteromonadaceae; Catenovulum.
OX NCBI_TaxID=1328313 {ECO:0000313|EMBL:EWH09686.1, ECO:0000313|Proteomes:UP000019276};
RN [1] {ECO:0000313|EMBL:EWH09686.1, ECO:0000313|Proteomes:UP000019276}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DS-2 {ECO:0000313|EMBL:EWH09686.1,
RC ECO:0000313|Proteomes:UP000019276};
RX PubMed=24604650;
RA Shan D., Li X., Gu Z., Wei G., Gao Z., Shao Z.;
RT "Draft Genome Sequence of the Agar-Degrading Bacterium Catenovulum sp.
RT Strain DS-2, Isolated from Intestines of Haliotis diversicolor.";
RL Genome Announc. 2:e00144-14(2014).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EWH09686.1}.
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DR EMBL; ARZY01000020; EWH09686.1; -; Genomic_DNA.
DR RefSeq; WP_051479812.1; NZ_ARZY01000020.1.
DR AlphaFoldDB; W7QCP7; -.
DR STRING; 1328313.DS2_11158; -.
DR PATRIC; fig|1328313.3.peg.2283; -.
DR eggNOG; COG2204; Bacteria.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000019276; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR010518; FleQ.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR PANTHER; PTHR32071:SF121; PTS-DEPENDENT DIHYDROXYACETONE KINASE OPERON REGULATORY PROTEIN-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF06490; FleQ; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000019276};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 133..361
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 478 AA; 53337 MW; 4540A19960D183DA CRC64;
MASTKRILLI DSASAEQAQL KTILQFIDED FDCVPPEQAQ QSLQDHQQWK AVLLGTAAGD
ISVSEKLING APELPFIVQD RYSELTAFAN VVAAINGSIN YSQLTQALHH CEAYLRNKPG
KAVQSSKDLL HTLVGKSAEM QTVRKLIEQV APTDANVLVL GESGTGKEVV AQSIHKLSKR
AKGPFVPVNC GAIPAELLES ELFGHEKGAF TGAISSRKGR FELAQGGTLF LDEIGDMPLP
MQVKLLRVLQ ERLFERVGSA TQVKADVRVI AATHRNLEDL VEQGKFREDL FYRLNVFPID
TPSLRERRED VPQLAQALID RLAEREEDSV KLTDNAMQSL MEHKWAGNVR ELANLLERLT
ILYPNQVVDV SDLPVKYQHI EVVEFEPEYP EAIQEREALN DLFAFDDEEE VEEEPVASVL
DMLPEEGINL KEYLAELEVS LINQALGHHD GVVARAAEML GMRRTTLVEK MRKYGLNQ
//
