ID YAB7_ORYSJ Reviewed; 169 AA.
AC A2PZN8; A3BLC7;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 06-MAR-2007, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE RecName: Full=Protein YABBY 7;
DE AltName: Full=OsYABBY7;
GN Name=YAB7; OrderedLocusNames=Os07g0571800, LOC_Os07g38410;
GN ORFNames=OsJ_023849;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, ALTERNATIVE
RP SPLICING, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA Hirano H.-Y.;
RT "Molecular characterization the YABBY gene family in Oryza sativa and
RT expression analysis of OsYABBY1.";
RL Mol. Genet. Genomics 277:457-468(2007).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=A2PZN8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=A2PZN8-2; Sequence=VSP_029049, VSP_029050;
CC -!- TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers.
CC {ECO:0000269|PubMed:17216490}.
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
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DR EMBL; AB274019; BAF45808.1; -; mRNA.
DR EMBL; AP008213; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014963; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000144; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015647119.1; XM_015791633.1.
DR AlphaFoldDB; A2PZN8; -.
DR SMR; A2PZN8; -.
DR STRING; 39947.A2PZN8; -.
DR PaxDb; 39947-A2PZN8; -.
DR GeneID; 9268430; -.
DR KEGG; osa:9268430; -.
DR HOGENOM; CLU_2726748_0_0_1; -.
DR InParanoid; A2PZN8; -.
DR OrthoDB; 2785032at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR GO; GO:0048481; P:plant ovule development; IBA:GO_Central.
DR GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IBA:GO_Central.
DR CDD; cd00084; HMG-box_SF; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR006780; YABBY.
DR PANTHER; PTHR31675:SF8; AXIAL REGULATOR YABBY 4; 1.
DR PANTHER; PTHR31675; PROTEIN YABBY 6-RELATED; 1.
DR Pfam; PF04690; YABBY; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Metal-binding; Nucleus; Reference proteome; Zinc;
KW Zinc-finger.
FT CHAIN 1..169
FT /note="Protein YABBY 7"
FT /id="PRO_0000308701"
FT ZN_FING 21..48
FT /note="C4-type"
FT REGION 63..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 84..99
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 154..161
FT /note="WAHLPRIQ -> NPAEARQG (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_029049"
FT VAR_SEQ 162..169
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_029050"
SQ SEQUENCE 169 AA; 18036 MW; 35A48C8A3E74152D CRC64;
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS
PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP
SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI QQKRGRDSC
//
