KEGG   Uncinocarpus reesii: UREG_05319
Entry
UREG_05319        CDS       T01132                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ure  Uncinocarpus reesii
Pathway
ure03022  Basal transcription factors
ure03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ure00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    UREG_05319
  09124 Replication and repair
   03420 Nucleotide excision repair
    UREG_05319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ure03021]
    UREG_05319
   03400 DNA repair and recombination proteins [BR:ure03400]
    UREG_05319
Transcription machinery [BR:ure03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     UREG_05319
DNA repair and recombination proteins [BR:ure03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     UREG_05319
SSDB
Motif
Pfam: BSD PH_TFIIH GvpO
Other DBs
NCBI-GeneID: 8440418
NCBI-ProteinID: XP_002584630
UniProt: C4JS80
AA seq 632 aa
MASAPASATASYKKKDGTLSMSQDGQSVSWAPKISGGPVGAFTLHVANLSHLQQTPITSP
KIMLKIFAYQPGKAASGEVEQYLFAFTSPTNARAEADTIRDILNAGIQTAKTAQAAASGG
QSAAMAIASAVTSTGSGKPIWYDDNKLKSDAELQQSLLKSDQNLRQVFMELLRNKPESVS
SAQFMSQFWSSRVHLLRAHAIEKSQARGPYNVLSSLKPRVENSVTKLNISKEQIQLIFTQ
HPLVKKVYDENVPRLTEQEFWSRFFQSRLFKKLRGERITESDATDSLLDKYLRADEHAGH
NSTTNVPHIIDLEANEEDVRRHGNRPNFDMRPSSLDKVPVIRTLNQLSEKIMANVAPIDR
DPSAPVGMDEETFNQLQLRDLRENEEQDRIMLNIKDQSRFFAATKEEESNEARIFASQDP
AVILKSLNVDLARTYPDRGAGVPLDQLVEPEEDDSDEDDTHPKKQVVGSKAGLARASAQI
FEAIRDRRAQADSASNSKTCGLPQAIFDRLSLTHATTTEFLHQFWQAFLSGNPDRVAEIT
SLVESLNRAMDRIKAVSDEAEAERQAEIERRKQQAREIMAATGRNIRPNLKGVEGGQKVV
NQLMGPTVNALGKAISEYRTAVAQQSKEAALV
NT seq 1899 nt   +upstreamnt  +downstreamnt
atggcgtccgcgccggccagcgcaacggcgtcatacaagaagaaggatggaacgctgtcc
atgtctcaagacgggcagtccgtctcatgggcgccaaaaataagcggcgggccagtgggt
gcttttacccttcatgttgcgaatcttagccatctccaacaaacccccatcacaagcccg
aaaatcatgcttaaaatctttgcgtatcaacccggaaaagctgcctctggggaggtggaa
caatatctttttgcttttacatctcccaccaacgcgcgtgccgaggcggatacgattaga
gatatactaaatgctggcattcaaacagcaaaaaccgcccaggcagctgcgtccggtggg
cagtcggcggctatggccatagcgagcgcggtgacttctaccggcagcggaaaacctatt
tggtacgatgacaataaactcaagtcagatgccgagctacaacagtctttgctgaagtcg
gaccagaatctgcgacaggtcttcatggagttgctgcggaacaaaccagaatcagtatcg
agcgcgcagttcatgtctcagttctggtcttcgcgagtacatctgcttcgtgcacacgcg
attgaaaaatcccaagctcgcgggccgtacaatgtgctttcttcgttgaaaccacgagtg
gagaacagtgttaccaagctaaacattagcaaagagcaaatccagctgatttttacccag
cacccattggtcaagaaggtatatgatgaaaatgtacccagactgacggagcaagaattc
tggtcccgctttttccaaagccggctatttaaaaagttgagaggcgagcgaattacagaa
tcagatgccaccgattcactacttgataagtatctgagggccgacgaacatgctggccac
aattcaacgacaaatgtaccacatatcattgaccttgaagcaaacgaagaggatgtcaga
aggcatgggaaccgtccgaattttgatatgaggccatcatctttggataaagtgcccgtc
attcgaactttgaatcaattgagcgagaagatcatggccaacgtcgcgccaatcgatcgt
gatccgtcggcgccggttgggatggacgaagagacattcaaccagctacaacttcgagat
cttcgtgaaaatgaagaacaagataggatcatgctgaacatcaaagatcagagtaggttt
tttgctgcaacaaaggaagaggaaagtaatgaagcgcgtatcttcgcgagtcaagatccg
gcagtcattttaaagtctttaaatgttgacttggccaggacatatcccgatagaggagct
ggtgtaccgttggatcagctcgttgaacccgaagaagatgacagtgatgaggatgatacc
catccgaagaaacaagtagttggctccaaggccggtttggccagggcttcggctcagatc
ttcgaggctattcgagaccgaagagcacaggctgattctgcatcgaattcaaaaacatgc
ggtttgccacaagcaatcttcgaccgtctaagcctcacgcacgcgaccaccactgagttt
ttacatcagttctggcaagctttcttgtctggaaaccctgatcgtgttgcggagatcacg
tcgttggttgaatccctcaatcgagcgatggatcgaatcaaagccgtctccgacgaggcg
gaagctgaacgccaggctgaaattgagcgccgcaaacagcaggctcgagagattatggcc
gccacgggtagaaatattcgaccgaatttgaaaggggtagagggcgggcagaaggtggtg
aatcagttaatggggcccacggtgaatgcactgggaaaggccatttcagagtatagaacc
gctgttgcgcagcagagcaaagaggcggcacttgtataa

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