KEGG   Verticillium alfalfae: VDBG_01185
Entry
VDBG_01185        CDS       T02227                                 
Name
(RefSeq) DNA damage-binding protein 1b
  KO
K10610  DNA damage-binding protein 1
Organism
val  Verticillium alfalfae
Pathway
val03420  Nucleotide excision repair
val04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    VDBG_01185
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDBG_01185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:val04121]
    VDBG_01185
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_01185
Ubiquitin system [BR:val04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     VDBG_01185
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      VDBG_01185
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      VDBG_01185
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 9531087
NCBI-ProteinID: XP_003009502
UniProt: C9S5L2
AA seq 1119 aa
MSYIVPIHRPSSIRLAISSRLWPDEDVLVTAKVNRLEISRPTSEGLTLLSSSVVCGTITL
LQTLRPKASETDILFVGTDLFHYFTARWDPTQGKLVTEQVIQDIAEPHMREAQSQDKCLV
DPAGRFVAMHLWEGVMNIMQLGTRKGANLRLDKDWAQVRLSELFMKASTFVPTETGHPTI
AFLYQNSIDREDAHLAVYRLMEDGNTNVSKFDPLKNRELELEIPDPFARTLIPVSIVESD
VKRYHRRDTTNASAQLGGLIVAGETMLIYVDTLTKVKISKALDEPRIFVSWAKYDVTRYL
LADDYGNLHLLTLEVDGVIVTGLSLKTIGKTSRASCLVYMGNEILFLGSHHGDSQLFTLD
LCAQTIRLIQTIPNIAPILDFSIMDLGNAGDSGVGNAFSSGQARIVAGCGVHHNGSLRSI
RSSVGLEDIGILDGIQDVRGLFSLKSYGSEKVDTLVVSFITETRVFKFDAYGSVEELADF
QGLTLDQPTLFAGSLANGHTLQITASSALLLDSESSVTINSWTSSNGGSIVNASVNEKAS
TGRRYWGATAARSRAFTHRETFPDIGAIGFWSTGSVCGHQPRNTASTAWGKASNRTTTTS
LFLGISLWSSCTRLSSQAPRYSFLLRTAKWFQSTSQKMTILSRRGKVSRWGAGRQACMCC
RDRVPLGRIIYSAATAEDVTHIAPFDSEGFPDAIFLATDKNVRIANVDTERRTHVNPLHI
GETVRRVAYSPALKAFGIGTIRKELLHDEEIVSSAFQLVDEIVLGKVGRPFALGGEASVE
LVEAVIRAELDDSTGQPAERFIIGTSYLADPDVNDSGDVKGRILVLGVDSDRNPYLIVSH
ELKGACRCLGVMGDKLVAGLSKTVVVYDYIEDSTTSGKLEKLTTFRPSTFPVDLDISGNM
IGVADLMQSMTLVEFVPAKDGRKAKLIERARHFEYIWATAVCSLGEESWLEADAQGNLMI
LERQPDAPTEHDQKQMRTTSEMHLGEQVNKIRPLQITATESDIIVPKAFLATVDGSLYVL
ANISAEYQSILLPFQERLAGIVRYLGQAAPEDNEGPSFSQWRGFRNAKRMAGAPFRFVDG
ELIERFLDLDELRQEAVVEGLGPSVEAMRNMVEELRRMH
NT seq 3360 nt   +upstreamnt  +downstreamnt
atgtcgtacattgtccccattcaccggcccagcagcattcgcctggccatttcaagccgc
ctgtggccagacgaggatgtgctggttactgccaaggtcaatcggcttgagatctcacgc
cccacctcagaaggcttgactctgttgagctcatccgtcgtttgcggcaccatcaccctc
cttcaaaccctccgacccaaagcatccgagaccgacattctgttcgtcggcaccgatctc
ttccactacttcactgcgcgatgggaccccacacagggcaagctcgtcacagagcaggtc
attcaggacattgcagagccgcacatgcgcgaggcccagagccaggacaagtgccttgtc
gatcccgcgggcaggttcgtcgccatgcacctgtgggagggcgtcatgaacatcatgcaa
ctgggcacgcgcaagggcgcaaacttgaggcttgataaagactgggctcaggttcgcctc
tccgaactgttcatgaaggcaagcaccttcgtgcccacggagacgggacatccgaccatc
gcctttctctaccagaattccatcgatagggaggatgcgcatctggccgtctacaggctc
atggaggacggcaacaccaacgtttccaagttcgaccctttgaagaaccgggagctcgag
ctcgagattcccgacccgttcgccagaacactcatcccagtgtcgatagtcgaatcagac
gtgaagcgttaccatcgccgcgacacaacaaatgccagcgcgcagcttggaggattgatt
gtcgctggcgagacaatgcttatctatgttgataccctgacgaaggtcaagattagcaag
gcactcgacgaacccaggatcttcgtttcgtgggccaagtacgatgttacacgatacctt
ctcgccgacgactacggaaacctacacctgctgacgctcgaggtcgacggcgtcatcgtg
actggactgtcgctcaagacgattggaaagacatcacgagcttcgtgtctggtctatatg
ggcaacgagattctgttcctgggatcacaccatggggattcccagctcttcacgcttgac
ctgtgcgctcagacaatacggctgatccaaacaataccaaacatcgccccaatcctcgat
ttctccattatggacctgggcaacgccggcgacagtggggttggaaacgctttctcgtct
ggacaggcccgcattgtggcgggctgcggtgtgcaccataacggtagcctgaggagcatc
cgaagcagtgtcggcttggaggacattggaatattagatggcatacaggatgtccgtggt
ctattctcgctcaagtcatatgggtctgaaaaggttgacacgcttgtcgtctcgttcata
acagagacgagggtcttcaaattcgatgcctacggcagcgtcgaagagctggcggacttc
cagggtctcacacttgaccagccgactttgttcgcaggttcattagccaacggccacacg
ctgcaaattacggcttcctccgcgcttcttctagactcggaaagcagtgttacgataaat
tcctggacgtcatccaacgggggaagtatcgtcaatgcttctgtcaacgagaaagcaagc
actgggcgacggtattggggggcgacggcagccagatctcgtgcattcacgcatcgcgag
actttccctgatatcggcgctattggcttttggtcgacaggctccgtgtgcgggcatcaa
cctcggaacactgcaagcactgcatgggggaaagcatcaaacagaacgacgacaacgtct
ctgttcctagggatctcgctttggtccagctgcacccgcctcagctcgcaggccccacgc
tattcgtttctcttgaggacggccaagtggtttcaatcaacgtctcaaaagatgactatt
ctctcacggcgaggaaaagtgtcacgttggggagcagggaggcaggcttgcatgtgctgc
cgcgaccgggtgcccctgggccggatcatctactcggctgccaccgccgaggacgtgact
cacattgcgccgtttgattctgagggttttcccgatgccatctttttggctactgacaag
aatgtccgtatcgccaacgtggataccgaacgccggactcacgtcaacccccttcatatc
ggtgagacggtgcggcgggtggcttactctccggcactgaaggcgttcggcatcggcacc
atccgaaaagagcttctgcacgacgaagagattgtctcaagtgccttccagctcgtagac
gagattgtgctcggtaaggtcggcaggccctttgcccttggcggagaagcctctgtggag
ctggttgaggctgtgattcgagccgaactcgacgacagtacagggcagcccgccgagaga
ttcataattggcacaagctatctcgcagaccctgacgtcaacgatagtggcgacgtcaag
ggtcggattttggtgcttggtgtagactcggacaggaacccgtacctcatcgtcagccac
gaactgaagggtgcttgccgatgcctgggggtgatgggagacaagctcgtggcgggcttg
agcaagacggtggtagtctacgactacatcgaggattcgacgacatctggaaagcttgag
aagctgacgacattccggccctcgacatttcccgttgatctcgacatatccggcaacatg
attggagtggctgatttaatgcagtccatgaccctggtcgaatttgtaccagcaaaagac
ggccgcaaggccaaactaatagagagggcgcgacactttgaatacatttgggccacagca
gtgtgcagcttgggcgaggaatcctggctggaggcggacgcgcagggaaacctcatgatt
ttggaacgtcagccggacgcgccgactgagcacgatcagaagcagatgcgcacaacgagc
gagatgcacctgggcgagcaggtgaataagatccgcccgctccagattacggcgacagag
agcgacattattgtcccaaaggccttcctcgcaacggtcgacggttctctctatgtcctt
gccaatatcagtgctgagtaccagagcatcctgctgcccttccaggaacgactggctggg
atcgtgcgctacctcggccaagccgcgcccgaagacaacgagggaccctcgtttagccaa
tggcggggattcagaaacgcaaagaggatggcgggagcgccgttcagatttgtggacgga
gagctgattgagcggttcttggacttggatgaacttagacaagaagctgttgtggaggga
ttgggaccgtctgtcgaagcgatgcggaacatggttgaagagctcagaaggatgcactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system