KEGG   Verticillium alfalfae: VDBG_04918
Entry
VDBG_04918        CDS       T02227                                 
Name
(RefSeq) pre-mRNA-splicing ATP-dependent RNA helicase PRP28
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Organism
val  Verticillium alfalfae
Pathway
val03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDBG_04918
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:val03041]
    VDBG_04918
Enzymes [BR:val01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     VDBG_04918
Spliceosome [BR:val03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    VDBG_04918
 Complex C
   U5 SnRNP specific factors
    VDBG_04918
SSDB
Motif
Pfam: DEAD ResIII
Other DBs
NCBI-GeneID: 9530532
NCBI-ProteinID: XP_003005312
UniProt: C9SIN6
AA seq 510 aa
MPLPEKPKLRFVPKKERERQAAEKAKNEAEDLRRKQQEDARKKAESEKKWLEKANAPAEN
HRDHDTDRPPERQQQDRRSGQNGKGASKKGGDARMTEEEFEKKQLRERYLGPEVNRNSSF
SAAKKRKRPTEFKFDWDEGEEPRSRMISLRRGHHQQGRVIVWDRRGRDLARKRAERFGFG
KRWTDKALNEMTARDWRIFKEDFGIATKGGAIPNPMRNWDESGLPGRLLDIVHRVGYNDP
TPIQRAAIPIALQARDLIGVAVTGSGKTASFLLPLLVYISDLPPLGEMNKNDGPYGLILA
PTRELVQQIESEANKFATPLGFRVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCIER
RLLVLGQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTDEAENAQLMKRYLGGK
DRYRQTMMYTATMPSVVERIAKKYLRRPAIVTIGNIGEAVDTVEQRVEFVSGEDKRKKRL
QQILFFGRFRASHHRLRQHQAELRCCGTRR
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgcctctccccgaaaagccaaagctccgattcgttccgaagaaggagcgtgagcgtcag
gcggccgagaaggctaagaacgaggctgaagatctgcggcgcaagcagcaagaggatgca
cgaaagaaagccgaatccgagaagaagtggctcgagaaggcaaatgcgcctgccgagaac
caccgcgatcacgatacagaccgaccgcccgaaagacaacaacaagaccggaggtctggt
cagaatggaaagggcgcgtccaagaagggaggtgatgctaggatgaccgaggaggaattc
gaaaagaaacagctgcgcgaacgctacctaggccccgaggtgaaccgcaactctagcttt
tctgcggcgaagaagcgcaagcggccgaccgagtttaagttcgactgggatgaaggcgaa
gaaccacgctcaaggatgatcagcttgcgccggggtcaccaccagcaaggtcgtgtcatt
gtctgggataggcggggtcgcgatctggctaggaagcgagcagaacgctttggcttcgga
aagcgatggacagacaaggctctgaacgagatgacagcccgtgattggagaatcttcaag
gaggacttcggtatcgcgactaaaggcggtgccattccgaacccgatgcggaactgggac
gagtcgggtctgcctggtcgtctcctcgacatcgtccaccgagttggttacaacgatccc
acgcccattcagagagctgctattccaatcgcgctacaggcgagggacttgatcggtgtt
gccgtcacaggttccggaaaaacagcttcattcttgctgccgctactggtctacatctct
gacctgccccctctgggcgaaatgaacaagaacgacgggccgtacggcctcatcctagca
cccacccgagagcttgtacagcagatcgaatctgaagcaaacaagtttgcgacgccacta
ggattcagagtcgtcagcatcgttggtggtcactcattggaagagcaagcctttgccctt
cgcaacggagcagagatcattgtcgccacacctggtcgacttgtggactgtatcgagcgg
cgtttgctggttctgggacagtgctgctatgttattatggatgaggctgatcgaatgatc
gatctcggtttcgaggaacctgtgaacaagattctagacgcgctaccggtttccaacgag
aaacctgacacggatgaggcagagaacgcgcagctcatgaagcgctacctgggaggaaag
gatcgataccgacagacaatgatgtacacggccaccatgcctagcgtcgtcgagagaatc
gccaagaaatacctgcggcgaccggctattgtcacgattggaaacatcggcgaagccgtt
gatacagtcgaacagcgcgtcgagttcgtctccggggaggataagcgaaagaaacggctg
caacagatcctcttcttcgggcgatttcgcgcctcccatcatcgtcttcgtcaacatcaa
gcggaactgcgatgctgtggcacgagacgttaa

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