KEGG   Verticillium alfalfae: VDBG_06085
Entry
VDBG_06085        CDS       T02227                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
val  Verticillium alfalfae
Pathway
val03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDBG_06085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:val03041]
    VDBG_06085
Enzymes [BR:val01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VDBG_06085
Spliceosome [BR:val03041]
 Complex C
  Other components
   Step II factors
    VDBG_06085
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD AAA_22 HA2_N AAA_19 SRP54 AAA_30 ResIII SLFN-g3_helicase nSTAND3 T2SSE ABC_tran AAA_24 Flavi_DEAD ATPase GAD AAA_16 AAA_14 TrwB_AAD_bind TsaE Spc42p
Other DBs
NCBI-GeneID: 9534745
NCBI-ProteinID: XP_003003643
UniProt: C9SMG1
AA seq 1047 aa
MSEDRSYAPPVFKRRRLDGSGRSTPRAEHASTPGADVPQPTDEDTKALDRDWYAGDEFGG
HVFGDDMHNPFGNDYSAWEKEHQEAVKAGEDVEPRRDMAADFDDDEATRVHLLVHELRPP
FLDGRTIFTKQLEPVPAVRDYQSDMAVFSRKGSKVVKEARQQRERQRQAQEATSMKGTAL
GNLMGVKEEDGDSAMAIAGEEDAVRKPDGETSNKSRGSTCPRLPSGKDLMRVIRENQVIV
VVGETGSGKTTQLTQFLHEEGYGDAGMIGCTQPRRVAAMSVAKRVAEEMDVKLGSTVGYA
IRFEDCTSKETVIKYMTDGVLLRESLNEPDLDKYSCIIMDEAHERALNTDILMGLFKKIL
QRRRDLKLIVTSATMNSKKFSEFYGGAPDFTIPGRTFPVDTMFHRSPVEDYVDQAVQQVL
SIHVSMDQGDILVFMTGQEDIEVTCELVQKRLDALNDPPKLSILPIYSQMPADLQAKIFD
RAAPGVRKCIVATNIAETSLTVDGIKYVVDAGYSKMKVYNPKMGMDTLQITPISQANASQ
RSGRAGRTGPGKAFRLFTEKAFKEELYLQTIPEIQRTNLSNTVLMLKSLGVKDLLDFDFM
DPPPQDTITTSMFDLWALGALNNLGELTKLGAKMSAFPMDPSLSKLLITAEEYGCSEEMI
TIVSMLSVPNVFYRPKERQDEADTQREKFWVHESDHLTYLQVYSAWKSNGMSDGWCIKHF
LHPKSLRRAKEIRDQLLDIMKMQKMQMLSCGMDWDVIRKCICSGYYHQAAKYKGSGEYIN
LRTNLGVQLHPTSALYAGHPPDYIVYHELILTSKVYVSTVTAVDPHWLADLGGVFYSVKE
KGYSMRDKRITETEFNRKMEIETQMADDRRRQQEQIAAEQARDSRKKTLSGPVKKVVTQG
AVKKPNFNEASPLFLIGRVGPPPPVSVYIVLSLSECPECFCARAGRSAHLKVLLSVDDVP
LRLVQLDDLGRARALVDVLEELLQHVFGSLRLAFHLVSSARCRALPRRVMRAGVWAQSHL
VVIRVATPSREPVLCSSFLRKVAETDA
NT seq 3144 nt   +upstreamnt  +downstreamnt
atgtccgaagaccgatcctacgccccgccggtcttcaagcggcgaaggctcgacggcagc
ggccgctcgacgccgcgggccgagcatgcctcgacaccgggcgccgacgtgccccagccg
acggacgaagacacgaaagcgctggaccgcgactggtacgccggtgacgagttcggcggg
cacgtgttcggcgacgacatgcacaacccgttcggcaacgactactcggcctgggagaag
gagcaccaggaggccgtcaaggcgggagaagatgtcgagccgcggcgcgacatggcggct
gactttgacgacgacgaggcgacgcgcgtgcacctgctcgtgcacgagctgcgcccgccc
tttctcgacggccggaccatctttacgaagcagctcgagcccgtgcccgccgtgcgcgac
taccagagcgacatggccgtcttcagccgcaagggcagcaaggtcgtcaaggaggcgcgc
cagcagcgcgagcgccagcggcaggcgcaggaggcgacgagcatgaagggcacggcgctc
ggcaacctcatgggcgtcaaggaggaggacggcgacagcgccatggccattgccggcgag
gaagacgccgtcaggaagcccgacggcgagacgagcaacaagagcagaggcagtacctgc
ccgcgtttgccgtcagggaaggacctgatgcgcgtcatccgggagaaccaggtcattgtc
gtcgtgggcgagacgggctccggcaagacgacgcagttgacgcagttcctgcacgaggag
ggctacggagacgcgggcatgattgggtgcacacagccgaggcgtgtcgctgccatgagc
gtcgcgaaacgcgtggccgaggagatggacgtcaagctcggcagcaccgtcggctatgcc
attcgtttcgaggactgtaccagcaaggagacggtcatcaagtacatgaccgatggtgtg
cttcttcgagagtcgctcaacgagcctgatctcgacaagtactcgtgcatcatcatggac
gaggcgcacgagcgtgcgttgaacaccgacatcctgatgggactcttcaagaagatcttg
cagaggagacgagatttgaaactcatcgtcacgtctgccaccatgaactcgaaaaagttc
tccgaattctacggcggcgcgccagatttcactattccgggaaggacatttccggtcgac
accatgttccatcggtcacctgtggaggattatgtggaccaggcagtgcagcaggttctg
tccatccacgtgtctatggaccagggcgacatcctcgtgttcatgaccggccaagaggac
attgaagtcacctgcgagctggtgcagaaacgcctggatgcgctgaatgacccgcccaaa
ctcagcatcctccccatctacagtcagatgcctgcagacctgcaggccaagattttcgac
cgagcggcaccgggggtccgcaagtgcatcgtcgcgacgaatattgcggagactagtctg
acagtcgatggtatcaagtacgtcgtagatgcgggctattccaagatgaaagtctataac
cccaagatgggcatggacacgcttcaaatcacccccatctcgcaggcgaacgcttcacag
cgttcaggtcgagccggccgaacaggccccggcaaggcgttccggctatttacagaaaag
gccttcaaggaggagctctacctgcagacaattccggaaatccagcggacgaacctcagc
aacacggttctcatgttgaagtcgctcggcgtcaaggatctcctcgatttcgactttatg
gaccctccgccgcaagacaccattaccacctccatgttcgacctctgggcgctgggcgcc
ctcaacaacctgggcgagctgacaaagctgggcgccaagatgagcgctttccccatggac
ccgtcactgtcgaagctcctcatcactgccgaggaatacggctgcagcgaggagatgatc
accatcgtctccatgctgtccgtgcccaacgtgttctaccgaccgaaggagcggcaagac
gaggcggacacgcagcgcgagaagttctgggtccacgagtcggatcatctcacctacctg
caggtgtactcggcgtggaagtccaacggcatgtcagacgggtggtgcatcaagcacttc
ctgcaccccaagtcgctgcgccgcgccaaggagatccgcgaccagctcctcgacattatg
aagatgcagaagatgcagatgctcagctgcggcatggactgggacgtcatccgcaagtgc
atctgctcgggctactaccaccaggccgccaagtacaagggctcgggcgagtacatcaac
ctgcgcaccaacctcggcgtccagctgcacccgacctcggccctgtacgcgggccacccg
cccgactacattgtgtaccacgagctcatcctcacgtccaaggtgtacgtgtccaccgtc
acagccgtggatccgcactggctcgcggacctcggcggcgtcttctactcggtcaaggaa
aagggctactcgatgcgtgacaagcgcatcaccgagaccgaattcaaccgaaagatggag
attgagacacaaatggccgacgacaggcggcggcagcaggagcagatcgccgccgagcag
gcgcgggactcgagaaaaaagacgctcagcggaccagtgaagaaggtcgtcacgcagggg
gccgtgaagaagccgaattttaacgaagcgagcccgctgtttttgatcggacgagttggc
cccccaccgcctgtttcagtgtacattgttttgtctctttccgaatgtccagagtgcttt
tgtgccagagctggccgctcagcgcacctgaaagtccttctctccgtcgacgacgtccct
ctccgtctggtccagcttgacgaccttggcagagcgcgggccctggtcgacgtcttggaa
gaacttcttcagcacgtcttcgggtccctgcgcctcgccttccacctggtctcgtcagct
cgttgtcgcgcgctaccgaggagggtcatgagggcgggtgtttgggcgcagtcgcacctt
gttgtcatccgtgttgcgacaccatcccgtgagcccgtactctgttcctcgtttttgcgt
aaagtagcggaaaccgacgcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (50)   

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