KEGG T01536: VAA

Vibrio anguillarum 775: VAA_03207

Entry

VAA_03207         CDS       T01536

Name

(GenBank) Transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

van Vibrio anguillarum 775

Pathway

van03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:van00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VAA_03207
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:van03400]
    VAA_03207
Enzymes [BR:van01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VAA_03207
DNA repair and recombination proteins [BR:van03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      VAA_03207

SSDB

Motif

Pfam:

TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII Glyco_tran_WecG UB2H ERCC3_RAD25_C Helicase_C_2 RecG_dom3_C

Other DBs

NCBI-ProteinID:

AEH32852

Position

I:complement(1338289..1341750)

AA seq 1153 aa
MTTHSLLTLIKPAGAGDKKHIGNLRGASLALAIAELANQHNSHTLLAVPDPQTALKLQHE
IEQFSDAEVALFPDWETLPYDSFSPHQEIISDRIARLYQLPSLKTGITIVPVSTILQRQT
PREFLLQHTLMVKTGDQFSLDKLRLQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PYRIDFFDDEIDTIRTFDPENQRSIEEISEIRLLPAHEFPTTESAIEDFRTRWRQRFEAR
REPESVYMQVSKGIWPAGIEYWQPLFFEHTETLFDYIAPESQLIVVGNIETAIDQFLTDV
EYRYQQRKVDPLRPLLPPHELWLKKDELFSLFKNVAQIQLSVEPISEKQGRINLAVSALP
DLAVMHQNKEPLAAIRQFSESFTGKIIFSVESEGRREALLELLQRVKLRPIEKETFQQAC
QAKEKQCLVLGASEHGFIDNNANLAFICESDLLGDRVILRRKKDRKVTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYLGLQTLEAGGMMTEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
ESAPLHKLGGEAWTKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRGQYATFKAGF
PFEETDDQNTAINAVLSDMCQKKAMDRLVCGDVGFGKTEVAMRAAFVCTDNNKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE
LKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQHDESTIREALLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEAR
ITVAHGQMRERELEKVMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSIGFTLYMEMLEQAVEALKNGREPSLDDLLREQTEVEMRLPALLPDDYI
PDVNTRLSMYKQIASVASRDELAELKVELIDRFGKLPDAANNLLGVAEVKIDAARIKVKK
IEAHEKGGYIEFYPDADINPVFLVRLLQSQPKKFAMEGPTKFKFAVPLADRRERIQFVSS
MLSEFQQNLMPRA

NT seq 3462 nt +upstreamnt +downstreamnt
atgactacacactctttactgactctgattaaacctgctggcgcgggcgacaaaaaacac
attggtaacctacgtggtgcaagccttgcgttggcaattgcagagctagccaaccagcat
aatagccacactttactggctgtacctgatcctcaaaccgccttaaagctgcagcacgaa
attgagcagtttagtgacgccgaagtggcgctgtttcctgattgggaaactttgccttat
gatagtttttcgcctcatcaagagatcatttctgatcgcatcgcgcgcctgtatcaatta
ccgagcttgaaaacaggcattaccattgtgcctgtgagcaccatattgcagcgtcagacg
ccgcgagaatttctgctacagcataccctgatggttaaaactggcgatcagttttcctta
gataaactgcgtcttcagctggaaaaatcgggctatcgtcatgttgatcaagtgtttggc
ccaggcgagtacgccagccgaggttcgattcttgatttatttccaatgggcagcagcgat
ccttatcgcattgatttttttgatgatgaaatcgacaccatacgcaccttcgatcctgag
aatcaacgctcaattgaagagatcagtgagatacgcttgctacctgctcatgaatttccc
accacagaaagtgcaattgaagattttcgcacccgctggcgtcaacgatttgaagcgcgt
cgtgaaccagaatctgtctatatgcaagtctcaaaggggatttggccagccggtattgaa
tactggcaaccactattttttgaacacactgaaaccttgttcgattatatcgcgccagaa
agccaactaattgtcgtaggaaatatcgaaacagcgattgaccagtttttaaccgacgtc
gaatatcgttaccagcagcgtaaagttgaccctcttcgcccgttgctgccacctcatgaa
ttgtggcttaaaaaagatgagcttttcagtcttttcaaaaacgtggctcagatccaactc
agtgtggaaccaatttcagaaaagcaagggcggatcaatttagcggtcagtgcattaccc
gacttggcggtcatgcatcaaaataaagagcctttagccgccatccggcaatttagtgaa
agtttcactgggaaaatcattttttccgtcgaatcagaaggccgtcgcgaagcattacta
gagctattgcaacgcgtaaaactgcgccctatcgaaaaagaaaccttccagcaagcgtgc
caagcaaaagaaaaacaatgtctcgtattaggggcatctgagcacggctttatcgataac
aatgccaacttagcgtttatctgcgaaagtgatttactcggtgaccgtgtcattcttcgc
cgtaagaaagatcgtaaagtcaccaatagtgacgctgtcattcgtaacttagctgaactc
aaaccagggcaacccgttgttcatattgatcatggtatcggccgttatctcgggttacag
acgcttgaagcgggtggcatgatgaccgaatacgtcacccttgagtatcaaaacgaagcc
aaactttatgtccctgtcgcttcattgaatctcattagtcgttactctggcggcgcggaa
gaaagcgcaccattgcataagctcgggggtgaagcatggaccaaggcacgacgaaaagcg
gccgaaaaagtccgcgatgtcgctgcagagctgctggatgtttacgccaagcgagagctc
aaaccaggctataagttcgctctggatcgtggccaatacgcgacctttaaagcaggtttc
ccatttgaagaaaccgatgatcaaaatacagctatcaacgccgtgctatcggacatgtgt
cagaaaaaagcgatggaccgattagtgtgtggtgacgttggatttggcaaaacagaagtc
gccatgcgcgccgcctttgtttgcaccgacaacaataaacaagtggccgtattagtgccg
acaaccttactcgcacagcagcattttgagaactttcgagaccgattcgctaacctgccg
atccgtgtcgaagttttatcacgcttcaaatcagcgaaagagcaaaagcagattctacaa
gatgtcgccgacggcaaagtcgacattttggttggcacgcataaactgctttccagcgag
ctaaaatttagcgatcttggtcttttgatcgttgatgaagaacaccgttttggtgttcgc
caaaaagaaaaagtgaaagcgatgcgtgctgatgtggatatcctcacgctaacggcaacg
ccgattccgcgcacgttaaacatggcgatgagcggaatgcgcgatctatcgattatcgcc
acaccacccgcacgacgcttagccatcaaaacctttgtgcgccaacatgatgagagcact
attcgagaggctctattacgtgaaatcatgcgcggtggacaggtttattttctacataac
caagtagaaactatcgacaaagtggccgccgatttagaaaagctggtccctgaagctcgt
attaccgtcgcccatggacaaatgcgtgaacgtgagctggaaaaagtgatgaacgacttt
tatcaccaacgattcaatgtattggtttgcacaaccatcattgaaaccgggattgatgtc
ccaaccgcgaacaccatcattatggaccgagcagataaccttggcttagcgcagctacac
caacttcgtggccgagtaggacgttctcaccatcaagcttatgcttacttactcactcca
catcctaaagccatcactaaagatgccgtgaaacgtttagaagcgattgcatctcttgaa
gatcttggggctggttttactctagcaacgcacgatttagaaatccgtggagcgggtgaa
ttattaggcgatgaacagagcggtcagatccaatcgattggttttactctctatatggag
atgctagagcaagcggttgaagcattaaaaaatggcagagaaccttctcttgacgatttg
cttcgtgaacaaaccgaagtggaaatgcgtttgccagcgctattacccgatgattacatt
cctgatgtaaatactcgcctctccatgtataaacagatagcgagtgtcgctagccgagat
gagctcgccgagctcaaagtcgagttgattgatcgctttggtaagttacctgatgctgca
aataacttactcggcgttgctgaagtcaaaattgatgctgcacgtataaaagtgaagaaa
atcgaagcgcatgaaaaaggcggctacattgagttctatccagatgctgacattaatccc
gtctttttggttagacttctgcaatcacaaccgaaaaaatttgcaatggaagggccaact
aagtttaagtttgctgtaccattagctgatagacgtgaacgaattcaatttgtgtcgagt
atgctcagcgaattccaacaaaacctgatgcctagagcataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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