KEGG T00916: Vapar

Variovorax paradoxus S110: Vapar_0914

Entry

Vapar_0914 CDS T00916

Gene name

murE

Definition

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase

Orthology

K01928

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]

Organism

vap Variovorax paradoxus S110

Pathway

vap00300	Lysine biosynthesis
vap00550	Peptidoglycan biosynthesis

Class

Metabolism; Amino acid metabolism; Lysine biosynthesis [PATH:vap00300]
Metabolism; Glycan biosynthesis and metabolism; Peptidoglycan biosynthesis [PATH:vap00550]

SSDB

Motif

Pfam:

Mur_ligase_M Mur_ligase_C Mur_ligase

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:1004995..1006557

AA seq 520 aa
MLTLTSPQLAALWLKERVQGALHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAAC
LVEQQGAEAFGFDGDERIASYPGLKAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWW
LAESLSTLAVPGGVRAPRLDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQR
ELRALVERGFGACAIEASSIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAE
LFRWPGLRAAVINIDDVHGASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGL
RFSVAEHDNDAVERMSTGLIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRME
RVGAADANAAAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRPM
MAAVAERQADRVVVTSDNPRSENPDAIISQVLLGLARPEAAQVQPDRAAAIADAIAQAAP
QDVVLLAGKGHEAWQEIAGQRIPFSDRIHALDALSKRGAA

NT seq 1563 nt +upstreamnt +downstreamnt
atgctgacactcacttcccctcaactcgccgcgctctggctcaaggagcgcgtgcagggt
gcgctgcatgcggacagccggccggtgggcgcgggcgacggcttcattgcctggcccggc
gcagccaccgacgggcgcaggcacgtggcttcggcactggcgcagggcgccgcggcctgc
ctggtcgagcagcagggcgccgaggccttcggtttcgatggcgacgagcgcattgcaagc
tatccggggctcaaggccgccaccggcccgatcgcatcggccttctacgacaacccctcg
gccgcgctcgaagtgctggccgtgaccggcaccaacggcaagacctccaccgcatggtgg
ctcgccgaatcgctctccacgctggccgtgcccggcggcgttcgcgcgccgcggctggac
ggcagcgccgagcgcggcgtgccttcgccctgcgcggtgatgggcacgctgggcatcggc
gtgccgccggagctcgtctacaccggcctcaccacgcccgacccggtgatgatgcagcgc
gagctgcgcgcgctggtcgagcgcggcttcggcgcctgcgccatcgaggcctcgtcgatc
ggcattgccgaacgccggctcgacagcgcgcgcatcgcggtggccgtgttcaccaatttc
acgcaggaccatctcgactaccacggcagcatggatgcctactggcaggccaaggccgag
ctgttccgctggcccgggctgcgcgccgcggtgatcaacatcgacgacgtgcatggcgcg
agcctgtgcgcgaacctgctcgaggccggcatcggtgcgctcgacgtctggaccgtgtcg
gccgccggcgcgccggcgcggctcatggcgcgcgacgtcggctacgacgcgcagggcctg
cgcttctcggtggccgagcacgacaacgatgcggtggagcgcatgtcgaccggcctgatc
ggccagtacaacgtggccaacctgctgggcgtgctcggcacgctgcgggccctggggctg
tcgctcgcgcaggccgtggcggcctgcagcaggctcaccagcgtgccgggccgcatggag
cgcgtgggcgccgccgatgcgaatgcggctgcgccgctggccgtggtcgactatgcccac
acgcccgacgccctcgacaaggcgctggccggcctgcgcccgcttgcgcagcagcgcggc
ggcgcgctctggtgcgtgttcggctgcggcggcgaccgcgatccgatcaagcgcccgatg
atggccgcggtggccgagcgccaggccgaccgcgtggtcgtgaccagcgacaacccgcgc
agcgagaaccccgacgcgatcatcagccaggtgctgctcggcctcgcgcgccccgaagcg
gcccaggtgcagcccgaccgcgcggccgccatcgccgacgccatcgcgcaggccgcgccg
caggacgtggtgctgctcgccggcaagggccatgaagcctggcaggaaatcgccggccag
cgcataccgttctcggaccgcatccacgcgctcgatgcgctttcgaagcggggtgccgca
tga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VAP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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