KEGG T00916: Vapar

Variovorax paradoxus S110: Vapar_1660

Entry

Vapar_1660 CDS T00916

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vap Variovorax paradoxus S110

Pathway

vap03410	Base excision repair
vap03420	Nucleotide excision repair
vap03430	Mismatch repair
vap03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vap03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vap03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vap03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:vap03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:1793621..1796164

AA seq 847 aa
MARANPLKRYKEKRNFGATPEPAEGGASAPGVLQFVVQKHWATRLHYDFRIELDGAMKSW
AVPKGPSYDTHDKRMAVHVEDHPIAYNQFEGEIPPRQYGAGKVIIWDKGSWTPIGDPRKG
YRAGRLKFELHGYKLRGKWTLVRMHGKADDKQDAWLLIKEHDEYARPAAEFSVVDQFPDS
VAQMPMPAAAVSAPAEAPAAPARKRGGKASASGMPADAVKAAMPAKLSPLLATLVDGPPH
DPQNWLYEIKFDGYRLLARIDAKGGVQLVTRNGHDWSSRMPHLVRAIERMKLAPGWLDGE
IVVLNESGGTDFQALQNAFDSENTRNIVYFLFDLPYYGGFDLTGVPLVERRGLLQALLAK
APPEIRFSEIFDAPPEDIVASACKIGLEGVIGKRKNSTYASRRSPDWIKLKCSQRQEFVI
GGYTDPKGSRVGIGALLIGVHDDKGDLIYAGAVGAGFNGRTLADMLERLKPLGIDKRPFK
NPTENDRRAHWVKPVLLAEVTFSEWTKDGHVRHPVFHSVRSDKPAKAIVREKPVHPAGAG
REAEAEPEPAATMPANFKVSHADRVVDPSTGITKVEVVRFYGLVAPLMMPHLKGRPVSFV
RAPQGIGGQLFFQKHLELGQMAGVRQLDAALWPKHPELIEIAGPLGLLSAAQMNVVEFHT
WNGLKTLIGKPDRMTFDLDPGEGVGWPMVLQAAELMRVVLDELGLAPFCKTSGGKGLHVV
VPLKRQYDWDTIKDFSQAIVRHMARTLPQMFVAKSGPDNRVGRIFIDYLRNGFGATTICA
WSVRARPGMGVSVPVEWQEVPTLTSGAQWTLRNIHARLDRGNDPWAAYAKAAKSPGAAMK
LLGFRVR

NT seq 2544 nt +upstreamnt +downstreamnt
atggcgcgcgcaaaccccctgaagcgctacaaggaaaagcgcaacttcggcgccaccccc
gagcccgcggagggcggcgcatcggcgcccggcgtgctgcagttcgtggtgcagaagcac
tgggcgacccggctgcactacgacttccgcatcgagctcgatggcgccatgaagagctgg
gccgtgcccaagggcccgagctacgacacgcacgacaagcgcatggccgtgcatgtggag
gaccatcccatcgcctacaaccagttcgagggcgagataccgccccggcaatacggcgcg
ggcaaggtgatcatctgggacaagggcagctggacgcccatcggcgatccgcgcaagggc
tacagggcggggcgcctcaaattcgagctgcacggctacaagctgcgcggcaagtggacg
ctggtgcgcatgcacggcaaggccgacgacaagcaggacgcgtggctcttgatcaaggag
cacgacgagtacgcccgcccggccgcggagttcagcgtggtcgaccagttcccggacagc
gtggcgcagatgccgatgcccgctgcggcggtctcggcgcccgccgaggcgccggccgca
ccggccagaaagcgcggcggcaaggcatcggccagcggcatgcccgccgatgcggtgaag
gccgccatgccggccaagctctcgccgctgctcgccacgctggtcgacggcccgccgcac
gatccccagaactggctgtacgagatcaagttcgacggctaccgcctgctcgcgcgcatc
gatgcgaagggcggcgtgcagctcgtcacgcgcaacggccatgactggagcagccgcatg
ccgcacctggtgcgcgcgatcgagcgcatgaagctcgcgcccggctggctcgatggcgag
atcgtggtgctcaacgagtccggcggcacggacttccaggccctgcagaacgccttcgac
agcgagaacacgcgcaacatcgtctacttcctgttcgacctgccgtactacggcggcttc
gatctcaccggcgtgccgctggtcgagcggcgcggcctgctgcaggcgctgctggccaag
gcgccgcccgaaatccgcttcagcgagatcttcgatgcgccgcccgaggacatcgtggct
tcggcctgcaagatcgggctcgaaggcgtgatcggaaagcgcaagaacagcacgtacgcc
tcgcgccgctcgcccgactggatcaagctcaagtgctcgcagcggcaggagttcgtcatc
ggcggctataccgatccgaagggctcgcgcgtgggcattggcgcactgctgatcggcgtg
cacgacgacaagggcgacctcatctacgccggcgcggtgggcgcgggcttcaacggccgg
acgctcgccgacatgctcgaaagattgaagccgctcggcatcgacaagcggccgttcaag
aacccgaccgagaacgaccgacgcgcgcactgggtcaagccggtgctgctggccgaggtc
acgttttccgaatggacgaaggacggccatgtgcggcatccggtgttccacagcgtgcgc
tcggacaagcccgcgaaggccatcgtccgcgagaagccggtgcacccggcgggcgccggc
cgcgaagcggaggctgagcccgaacccgccgccaccatgcccgccaacttcaaggtctcg
catgccgaccgcgtggtcgatccgtcgaccggcatcaccaaggtggaggtggtgcgcttc
tacggcctggtcgcgccgctgatgatgccgcacctgaagggccggcccgtgtcgttcgtg
cgcgcgccgcagggcatcggcggccagctgttcttccagaagcacctggagctggggcag
atggccggcgtgcggcagctcgatgcggcgctgtggcccaagcaccccgagctgatcgag
atcgcggggccgctcgggctgctgagtgcggcgcagatgaacgtcgtcgagttccatacc
tggaacggcctgaagacgctcatcggcaagcccgaccgcatgaccttcgacctcgacccg
ggtgagggcgtcggctggcccatggtgctgcaggccgccgagctgatgcgcgtggtgctc
gacgaactgggcctggcgccgttctgcaagaccagcggcggcaaggggctgcacgtggtg
gtgccgctcaagcggcagtacgactgggacaccatcaaggatttctcgcaggccatcgtg
cggcacatggcgcgcaccctgccgcagatgttcgtcgccaagagcgggccggacaaccgc
gtcggccgcatcttcatcgactacctgcgcaacggcttcggcgcgaccaccatctgcgcc
tggtcggtgcgggcgcgccccggcatgggggtgtcggtgccggtggaatggcaggaggtt
cccacgctcacgagcggtgcgcagtggaccctgcggaacatccatgcacggctcgaccgc
ggcaacgatccgtgggctgcgtatgcaaaggctgcaaagagtccgggagccgcaatgaag
ctgctgggcttcagagttcgatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VAP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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