KEGG   Variovorax paradoxus S110: Vapar_4341Help
Entry
Vapar_4341        CDS       T00916                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vap  Variovorax paradoxus S110
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:vap00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Vapar_4341
Enzymes [BR:vap01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Vapar_4341
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Vapar_4341
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
1:complement(4587651..4588463)
Genome map
AA seq 270 aa AA seqDB search
MPELPEVEVTRRGFAERIAGARIDAVRIGKPLRWALMVMPEALVGRRVLQVRRRGKYLLI
DLDRGLLLLHLGMSGSLRFDAALPAPGVHDHFDLVTELGTLRLNDPRRFGAVVYVEDEAA
PWAIKLLGGLGMEPLGDAFDLDAFHAGLRKRKAAVKQVLLAGDVVVGVGNIYASEALFLA
GIRPTLSAARISRPRAARLHAAVREILARAVEKGGSTLRDFSNVEGQSGYFQLEATVYGR
AGEPCRVCATPIRLLRQGQRSTYYCPNCQK
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgcctgagcttcccgaagtcgaagtgacgcggcgcggttttgccgagcgcattgccggt
gcacgcatcgatgcggtccgcatcggcaaacccttgcgctgggcactcatggtgatgccc
gaggcgctggtcgggcgccgcgtgctgcaggtgcgccggcgcggaaagtacctgctgatc
gacctggaccgcggcctcctgctgctgcacctgggcatgtcgggcagcctgcgcttcgat
gcggcgctgcctgcgccgggcgttcacgaccacttcgatctggtgaccgaactcggcacg
ctgcggctgaacgatccgcgccgcttcggcgccgtggtctacgtggaggacgaggcggcg
ccctgggccatcaagctgctcggcggcctcggcatggagccgctgggcgatgctttcgac
ctggacgcgttccacgccggccttcgcaagcgcaaggcggcggtgaagcaggtgctgctc
gcgggtgatgtggtggtgggcgttggaaacatctatgcgtcggaggccttgttcctggcc
ggcatccggcccacgctttcggctgcgcgcatcagccggccgagggcagcccggctccat
gcggccgtgcgcgaaatcctggccagggcggtcgagaagggcggcagcacgctgcgcgac
ttttccaacgtggaggggcagagcggctatttccagctcgaagccacggtctacggccgg
gccggcgagccctgtcgggtctgcgcaacgccgatccggctgctgcgccaagggcagcgt
tccacttactattgcccgaattgtcaaaaatag

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