KEGG T04660: 108331601

Vigna angularis (adzuki bean): 108331601

Entry

108331601         CDS       T04660

Name

(RefSeq) exosome complex exonuclease RRP44 homolog A

K12585

exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]

Organism

var Vigna angularis (adzuki bean)

Pathway

var03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:var00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108331601
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:var03019]
    108331601
Messenger RNA biogenesis [BR:var03019]
Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     108331601

SSDB

Motif

Pfam:

RNB PIN_4 OB_Dis3 Rrp44_CSD1 Rrp44_S1 CSD2 OB_RNB

Other DBs

NCBI-GeneID:

108331601

NCBI-ProteinID:

XP_017421894

Position

4:11858179..11879829

AA seq 934 aa
MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTLGARLNASPSTTILVVDTN
VVLNQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRLRALCSNATKKFYVFSNEYHRDT
YVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENRRKASEEGIFAETVES
YVKSLGQPDLLDLLVRPASEDVNMEDVEDHRPSKRKVIYSEHKPMSEITSGLHRGIYHQG
KLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWHEVSSLSIAG
EEDENEDEDVHLAPNSADVAPRTPQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEP
MPLPAGSGGIAHALFISKDRRIPKIRIQTRQLDNLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVF
SVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADVISTRYTKSVIKSSAALSYVEAQAR
MDDSRLRDPITTGLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVS
SSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNAQHAGRASVELH
TLIYFRNRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKARKGNGEWYVDEQQQKIKR
MDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI

NT seq 2805 nt +upstreamnt +downstreamnt
atgctccacaacaagtcctttgtcaagaaaaccagggcaggcaaagtcatgaagcaagtg
cgggagcactacctgcgcgacgacatatactgcggcgcaccgttttgcaccgtttgcgat
actttgggtgctcgcctcaacgcttctccttccaccaccattctcgtcgtggacaccaat
gtcgtgctcaaccagattgatttgctggagaatcaggcattcgataacattgtggtgttg
tccattgtgttggaagaggttaaaaacaagaatatggctgtttacaaccgtttaagagcc
ctctgtagcaatgccacgaagaagttctatgttttttccaatgagtaccacagggataca
tatgttaaggaaatgagtggggaaactaaaaatgataggaatgatagagctatccgagtg
gctactcagtggtatcagaaccatcttggtggtgcagtaaaggttttgcttataactaat
gatagagagaacagaaggaaggctagtgaagagggcatttttgctgaaacagttgagtca
tacgtcaagtctttaggccaacctgatctacttgatcttcttgtgcggcctgcatctgaa
gatgtgaacatggaagatgtcgaagatcatagaccatccaagaggaaagtgatctattca
gagcataagccaatgtcagaaatcacttctggtttgcatcgtggaatatatcatcaaggg
aagcttcgtgtaaaccgttataatccatttgaagcatatgttgggagggagagcattggt
gatgaaatagttatttatgggcgctcaaacatgaaccgagcttttgatggagatattgtg
gcagctgaacttctgccacaggaccagtggcacgaagtctcatctctatctatagccggt
gaagaagatgagaacgaggacgaagatgttcatctagctcctaatagtgctgatgttgca
cctaggactcctcagcagggttcttctgaacaagtaaatgctgtacccagtcgtccttct
ggtcgcattgttggtattataaagaggaactggcattcgtattgtggatctttggagcca
atgcctttgccagcagggagtggtggaattgctcatgccttgtttatctccaaagatcgc
agaattcccaagattcgaatccaaacacgccaacttgataaccttttggataagaggatt
attgttgcagttgattcttgggatcgtcagtctagatatccatctggccattatgtgcga
actataggggagataggtgatagagatactgaaagtgaggtggttttgatagaaaatgat
ataaatactcgaccattctcttcgcaagtgctggcgtgcttgccaccattaccatggttg
gtctcttctgaagatttgtccaatcctataagacaggacttgcgtcatctgcttgtgttc
agtgtcgatcctccaggctgcaaggatattgatgatgcactccattgccacgctcttcct
aatggaaactttgaagttggagttcatattgctgatgttacaaattttgttcatcctggt
actccacttgatgatgaggcttcccagaggggtacatctgtctaccttgtggagcggcgt
atagacatgcttcccaaacctcttacggaggacatatgttcacttcgttcggatgtggaa
aggctcgcattctctgtcatttgggaaatgacacctgaagccgacgtaatttccaccaga
tatacaaaaagtgtcataaaatcttctgcagcattgtcttatgttgaagcacaagcaagg
atggatgatagtcgtctgagggatcccattactacaggtttgaggaatatgaatagttta
gctaagaaaatgcgattgaggcgcattgagagaggagctttgactcttgcatctgctgaa
gtcaaatttcaaattgacacagagactcacgaccctcttgatattggaatgtaccagatc
agggaggccaaccaaatggtggaggagtttatgcttgctgctaatgtttccgttgcacaa
caaattcttaaaagtttttcgttatgctcattattaaggcgtcatccaacaccaaccaga
gagatgcttgaacccttattacagaccgctgctgcagttggcttgcacttggatgtttca
tcatcaaaagcattggctgattctcttgaccatgctgtgggcgatgatccatacttcaat
aagttaatccgtatactggcaactaggtgcatgagtcaggcagtttatttctgcagtggg
gatcttagccctccagaatatcatcattatgggcttgcagctcctttatatacccatttc
acatcacctattagaagatatgcagatgtcattgtgcacaggctacttgctgcttcttta
ggaatatcaaagttaccgtctgtatttcaagacagactccagctcagtagtattgcagac
aatttaaattatcggcacaggaatgcccagcatgcagggcgagcatctgtagagctacat
actctaatttatttcaggaataggcctacagacacggaggctagaatagtgaaaataaga
tctaatggcttttttgtgtttgttcccaaatatggcatagaaggacctatatatttgaca
aaagccagaaagggaaatggagaatggtatgtagatgagcaacagcagaaaataaaaagg
atggatggtagcctttcatacagcgttttgcagacagtccaaattcacatggaggttgtg
gagcctcaacctaaccgtcccaaacttcagcttactctcatctag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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