KEGG   Verrucomicrobia bacterium IMCC26134: IMCC26134_00155
Entry
IMCC26134_00155   CDS       T03830                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vba  Verrucomicrobia bacterium IMCC26134
Pathway
vba03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    IMCC26134_00155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vba03400]
    IMCC26134_00155
Enzymes [BR:vba01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     IMCC26134_00155
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     IMCC26134_00155
DNA repair and recombination proteins [BR:vba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     IMCC26134_00155
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH NFACT_N
Other DBs
NCBI-ProteinID: AKC81579
UniProt: A0A0E3YT52
Position
complement(35704..36567)
AA seq 287 aa
MPELAEVEYIRRRWNPGLGHVVTTVRLHPGAGVFKTCDSAVLAKLLPGARLDSSAAAAKQ
MLFRFTADTPARTPLWLGLHLGMTGELTVRPAGLPAAKADHLILDQPAAPAAKNHPGHSL
VFSDFRMFGRVQFHAGADAPAWWTGIAPAVTSADFTLAVVSEFLTRRARAPLKAVLLMQE
RFPGIGNWMADEILWRAALHPARRCGDLTTAEIKKLHRETVWVAAQALRLIGEADTPEWP
DPPATWLFQHRWQDGGKCPRTQKPLERAAIGGRTTCWSPARQKLAAH
NT seq 864 nt   +upstreamnt  +downstreamnt
atgcccgaactcgccgaagttgaatacatccgccgccgctggaacccgggcctcggccac
gtcgtcaccacggtccgcctccaccccggcgccggggttttcaaaacctgcgactccgcc
gtgctcgcgaaactcctccccggcgcgcggctcgactcttccgccgccgccgcgaagcag
atgctcttccgcttcaccgccgacacccccgcccgcaccccgctctggctcggcctccac
ctcggcatgaccggcgagctcaccgtgcgccccgccggcctgcccgccgccaaggccgac
cacctcatcctcgaccaacccgcagccccggccgcaaaaaaccaccccggtcactcgctg
gtgttctccgatttccgcatgttcggccgcgtccaattccacgccggcgccgacgccccc
gcctggtggaccgggatagcccccgccgtcacctccgccgactttaccctcgccgtcgta
tccgaattcctgacacgccgagcccgcgccccgctcaaagccgtgctcctgatgcaggaa
cgcttccccggcatcggcaactggatggccgacgagatcctttggcgcgccgccctccat
cccgcccgccgttgcggcgacctcaccaccgccgagattaaaaaacttcaccgcgagacc
gtctgggtcgccgcccaggccctgcgcctgatcggcgaagccgacacccccgaatggccc
gatccgcccgcaacctggcttttccagcaccgctggcaggacggcggcaaatgccctcgc
acccaaaaacccctcgaacgcgccgccatcggaggccgcaccacctgctggtcccccgcc
cgccaaaagctcgccgcccattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system