KEGG   Variovorax boronicumulans: CKY39_27350
Entry
CKY39_27350       CDS       T05068                                 
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CKY39_27350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vbo03400]
    CKY39_27350
Enzymes [BR:vbo01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CKY39_27350
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CKY39_27350
DNA repair and recombination proteins [BR:vbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CKY39_27350
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Auto_anti-p27 C1_2 RNHCP OrfB_Zn_ribbon NFACT_N
Other DBs
NCBI-ProteinID: ATA56537
UniProt: A0A250DQ95
Position
complement(5918520..5919335)
AA seq 271 aa
MPELPEVEVTRRGFADRIAGARIESVRIGKPLRWALMVVPQALVGRRVREVRRRGKYLLI
DLDRGLLLLHLGMSGSLRFDIHLPEPGVHDHFDLVTELGTLRLNDPRRFGAVVYVDDEEA
PWALKLLGGLGMEPLGDAFDLDAFHAGLKKRRTAIKQVLLAGDVVVGVGNIYASEALFIA
GIRPTLSAARISRPRAAKLHAAVRDILARAVEKGGSTLRDFSNVDGQSGYFQLEATVYGR
TGEPCRVCGTPIRQLKQGQRSTYYCPHCQKS
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcctgaactacccgaagtcgaagtcacccggcgcggctttgccgatcgcatcgccggc
gcgcgcatcgagtccgtgcgcatcggcaagccgctgcgctgggcgctgatggtggtgccg
caggcgctggtcggacgccgcgtgcgcgaggtgcgccgccgcggcaagtacctgctcatc
gacctggaccgcgggctgctgctgctgcacctgggcatgtcgggcagcctgcgcttcgac
atccacctgccggagcccggcgtgcacgaccacttcgatctggtcaccgaactcgggacc
ctgcggctgaacgacccgcgccgcttcggcgcggtggtctacgtggacgacgaagaggcg
ccctgggcgctgaagctgctcggcgggctgggcatggagccgctgggcgatgccttcgac
ctcgacgccttccatgctggactgaagaaacgccgcacggccatcaagcaggtgctgctc
gcgggcgacgtggtggtgggcgtgggcaacatctacgcgtcggaggcgctgttcatcgcc
ggtatccgcccgaccctgtcggcggcgcgcatcagccggccgcgcgccgcgaagctgcat
gcggcggtgcgcgacatcctggcgcgggcggtggagaagggcggcagcaccttgcgcgac
ttctcgaacgtggatgggcaaagcggctacttccagctcgaagcgaccgtctacgggcgc
acgggcgagccgtgccgtgtgtgcggcacgccgatccggcagctgaaacaggggcagcgc
tctacttattactgcccccattgccagaaatcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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