KEGG   Vibrio cholerae O1 El Tor FJ147: IR04_07940
Entry
IR04_07940        CDS       T03827                                 
Symbol
dksA
Name
(GenBank) RNA polymerase-binding transcription factor
  KO
K06204  RNA polymerase-binding transcription factor
Organism
vcf  Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:vcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vcf03000]
    IR04_07940 (dksA)
   03021 Transcription machinery [BR:vcf03021]
    IR04_07940 (dksA)
   03009 Ribosome biogenesis [BR:vcf03009]
    IR04_07940 (dksA)
Transcription factors [BR:vcf03000]
 Prokaryotic type
  Other transcription factors
   Others
    IR04_07940 (dksA)
Transcription machinery [BR:vcf03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription elongation factors
     IR04_07940 (dksA)
Ribosome biogenesis [BR:vcf03009]
 Prokaryotic type
  rRNA transcription factors
   IR04_07940 (dksA)
SSDB
Motif
Pfam: DksA_CC zf-dskA_traR Not3
Other DBs
NCBI-ProteinID: AJZ99076
Position
I:complement(608902..609348)
AA seq 148 aa
MTESKKKTLGILAIAGVEPYQEKPGEEYMSPGQITHFTKILEAWRNQLREEVDRTVHHMQ
DEAANFPDPVDRASQEEEFSLELRNRDRERRLIKKIEKTLDKIKEEDFGYCESCGVEIGI
RRLEARPTADLCIDCKTLAEIKEKQMLG
NT seq 447 nt   +upstreamnt  +downstreamnt
atgacagagtctaaaaagaaaacgctaggcatcctagccattgctggtgttgagccatat
caggagaagccgggtgaagagtatatgtcacctgggcaaatcacacattttacaaagatt
ttggaagcgtggcgcaaccaactgagagaagaagtggaccgtactgttcaccacatgcag
gatgaagcagccaacttcccagaccctgttgaccgagcttctcaagaagaagagttcagc
ttagaactgcgtaaccgtgaccgcgagcgccgtttgatcaagaaaatcgaaaagaccctc
gacaagatcaaagaggaggatttcggttactgtgaatcgtgcggtgtggaaatcggtatt
cgccgtttagaagcgcgcccaacagccgatctctgtatcgattgcaaaacactggctgaa
atcaaagaaaagcaaatgcttggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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