KEGG V.cholerae: VC0328

Vibrio cholerae O1: VC0328

Entry

VC0328 CDS V.cholerae

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway vch00230 Purine metabolism
vch00240 Pyrimidine metabolism
vch01100 Metabolic pathways
vch03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:vch00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:vch00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:vch03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2
RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 15640355
NCBI-GeneID: 2615094
JCVI-CMR: VC_0328
UniProt: Q9KV30

Structure

PDB: 3E7H

Position I:340272..344399

AA seq 1375 aa
MNSHYSKQRLVTVLTLFNLKGGQFGSLISELRNPMVYSYTEKKRIRKDFGTRPQVLDIPY
LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQ
IRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIV
SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPA
SIILRALGKTSAEILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDIEADGKVYVEKG
RRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLS
QAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFE
SLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDID
HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFF
GSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG
PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEE
GGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQ
RQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEA
GIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMP
WNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLD
ESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAG
TVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLAGGYTE
AKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGV
LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR
MNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDE
DVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTV
GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE

NT seq 4128 nt +upstreamnt +downstreamnt
atgaattcacactacagtaaacagcgattagtcactgtcctcaccctttttaacctgaaa
ggtggacagtttgggtcacttatcagcgagctgaggaaccccatggtttactcttatacc
gagaaaaagcgcatccgtaaggactttggtactcgtccacaagtgttggacattccatac
ctgctatcgatccagctcgattcgttcgaaaagttcatcgaacaggatcctgaaggacaa
tacggtcttgaagccgcttttcgttctgtatttccaattcagagctataacggcaattca
gagctgcaatacgttagctaccgtcttggtgagccagtttttgacgttaaagaatgtcaa
atccgtggtgtaacttattcaaaaccgctacgcgtgaaattacgcttagtgatctttgat
aaagacgcgccagcaggtactgtcaaagatattaaagaacaagaagtctacatgggcgaa
attccgctcatgacagaaaatggtaccttcgtaatcaatggtactgagagggttatcgta
tcccagctgcaccgaagcccaggcgtgttcttcgacagcgataagggtaagacccactct
tcaggtaaagttctgtataacgcacgtatcattccgtaccgtggttcatggctcgatttt
gagttcgatccaaaagacaacctgtacgtacgtattgaccgtcgtcgtaagctgcctgca
tcgatcatcctgcgtgcactaggtaaaactagcgccgagatcctggacatcttcttcgaa
aaagtgaatttcgaagtgaaagatcaaactctaatgatggagttggttccagagcgtctg
cgtggtgaaactgcgaccttcgatatcgaagcggatggcaaggtttacgtagagaaaggc
cgtcgtgtgactgcacgtcacatccgtcaacttgaaaaagatggcgtgaactttattgaa
gttccggttgagtacatcgtaggtaaagtatctgcgaaagattacgtgaatgaagcgact
ggcgaactgatcattaccgcgaaccaggaaatcagcctggaagcgctagcgaacctgtct
caagccggttacaaaaagctagaagttctatttaccaatgatctggaccacggtccgttc
atgtcagaaaccctgcgtgttgatagcacgacagatcgcatctctgcactggtagaaatc
taccgcatgatgcgccctggcgagccaccaacgaaagaagccgcggaatcgctgtttgaa
agtctattcttctctgcagagcgttacgatctgtcgactgttggccgtatgaagttcaac
agctcaatcggtcgtgaagatgcggaagagcaaggcacgctggacgaagttgacatcatc
gaagtgatgaaaaagctgatctcgattcgtaacggtaaaggcgaagtggacgatatcgac
caccttggcaaccgtcgtatccgtagtgtcggcgaaatggcagagaaccaattccgtgtt
ggtctggtacgtgttgaacgcgcagtgaaagaacgcctaagcttgggcgatctggacaac
gtgatgccacaagacctgatcaacgcgaaaccaatttctgctgctgtaaaagaattcttt
ggttcttctcagctgtctcagtttatggatcagaacaacccgttgtcagaagtgacgcat
aagcgtcgtatttctgcattgggccctggcggtctgactcgtgagcgtgctggcttcgaa
gtacgtgacgtacacgtaacgcactacggtcgtctatgtcctatcgaaacacctgaaggt
ccaaacatcggtttgatcaactcgctgtctgcgtttgcacgctgcaacgagtacggtttc
ctagaaaccccttaccgtcgcgtagtcaacggtgttgtgactgacgaagtggattacctc
tctgcgattgaagaaggtcaattcgttatcgctcaggcgaacgctaagctgacagaagaa
ggcggttttgctgatgaactggttaccgcacgtcaaaaaggcgagtcaggtcttcaccca
cgtgaacacgttgactacatggacgttgcgacaaaccaagttgtatcgatcgcggcatcc
ttgatcccgttcctagaacacgacgatgcgaaccgtgctttgatgggtgcgaacatgcaa
cgtcaggcggttccaactctgcgttcagagaaaccactggttggtacgggtatcgagcgt
aacgtagcggttgactctggtgtaacagcggtggcgaaacgtggcggtgttatccagtca
gttgatgcttctcgtatcgtagtcaaagtgaacgaagaagagttgatccctggcgaagcg
ggtatcgacatctacaacctgactaagtacacccgttcgaaccagaatacttgtatcaac
cagcgtccatgtgtgatgccgggtgaacctgtagctcgtggcgatgtactggcagacggt
ccttcaactgaccttggcgaactggctcttggccaaaacatgcgtatcgcattcatgcct
tggaacggttacaacttcgaagactcgatcttagtgtctgagcgcgtagttcaagacgac
cgctttactactatccacatccaagagctttcttgtgtggcgcgtgatactaagctgggc
gcagaagagatcacggctgacatccctaacgtgggtgaagcggctctgtctaagcttgac
gaatctggcatcgtgtacatcggtgcagaagtgaaaggcggcgacattctggttggtaaa
gtgacaccaaaaggtgaaactcaactgactccagaagagaaactgctgcgtgcgatcttc
ggtgagaaagcctcagacgtgaaagatacgtctctgcgtgtaccgaactcagtagcaggt
acggttatcgacgtacaagtctttactcgcgatggcgtagaaaaagacaagcgtgcgctt
gaaatcgaacagatgcagctgaaagaagcgaagaaagacctgactgaagagttccaaatt
ctggaaggcggtcttctggcgcgtgttcgttctgtactgctggcgggtggttacactgaa
gcgaaactgggttcaatcgaacgtaagaaatggttagagcagacgcttgaaaatgaagag
ctgcaaaaccagctagagcaactggcagaacagtacgacgaactgaaagcagacttcgat
aagaagtttgaagcgaagcgtcgtaagatcacccaaggtgatgatctggctcctggcgta
ctgaagattgttaaggtttacctagcagtgaaacgtcgcatccagccgggtgataagatg
gcgggtcgtcacggtaacaagggtgttatctctaagatcaaccctgttgaagacatgcca
tacgatgaaaacggtcagccggttgacatcgtactgaacccactgggcgtaccatcacgt
atgaacatcggtcagatcctagaagttcacttgggtctggcggcgaaaggtatcggtgac
aagatcaaccaaatgatcaaggaacaacaagagctggcgaagctgcgtgagttcctgcag
aaggtttatgatctaggcgatactcgtcaacgcgttgatatctcagaactcagtgatgaa
gatgttcgtacactggcgcataacctgcgtgctggtctaccggtcgcaacgccagtcttc
gatggtgctcctgaatcgtctatcaaagctatgttggaactggcggatctgccagcttca
ggtcagttgactctgttcgatggccgcacgggtgacgcatttgagcgccctgttaccgtg
ggttacatgtacatgctgaaactgaaccacttggttgacgacaagatgcacgctcgttct
acaggctcttacagtctggttactcagcaacctctgggtggtaaagctcagttcggtggt
cagcgcttcggtgagatggaagtgtgggcactggaagcatacggtgctgcgtataccctg
caagagatgttgaccgttaaatcggacgacgtgaacggccgtactaagatgtataagaac
atcgtagatggcaatcacgcgatggaacctggtatgccagaatcgttcaacgtactgttg
aaagagattcgctcgctgggtatcaacatcgagctagaagacgaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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