KEGG V.cholerae: VC0329

Vibrio cholerae O1: VC0329

Entry

VC0329 CDS V.cholerae

Definition DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway vch00230 Purine metabolism
vch00240 Pyrimidine metabolism
vch01100 Metabolic pathways
vch03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:vch00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:vch00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:vch03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23

Other DBs NCBI-GI: 15640356
NCBI-GeneID: 2615095
JCVI-CMR: VC_0329
UniProt: Q9KV29

Position I:344504..348709

AA seq 1401 aa
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE

NT seq 4206 nt +upstreamnt +downstreamnt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgcgcacatctggttcctgaagtctctg
ccatctcgtatcggtctactgatggacatgcctctgcgtgacatcgaacgcgtactttac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgctgaagcgatcaaagatctgctggcatcgatggatctgcctgcagaagcagagcag
atgcgcgaagagctggataccactaactctgaaaccaaacgtaagaaactgactaagcgt
ctgaagctggttgaagcgttcgtcgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccattggttccactggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctaccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagccgctaagaaaatg
gttgagcgcgaagaagcggtcgtatgggatatcttggatgaagtgatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtc
ctgatcgaaggtaaagcgatccaactgcacccactagtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaatcatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaatgcg
aaaggcgaaggtatgtacctgactggtcctgctgaggctgagaaggcgtaccgtactaag
actgctgagctgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagctgaccactgaaaccaagatgattgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagttaggtaagaagcaa
atttctaacctgctcaacgaggcataccgtaagctgggtctgaaagacaccgttatcttc
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtatcggttggt
atcgacgatatggtagttccagcggctaagtacacggaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggtgaccgctggcgaacgctacaac
aaagtgatcgacatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgattaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaacagcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacgttgtggtgactgaacatgactgtggcaccctagaaggcgtg
gtgatgacaccgcacatcgaaggtggtgacgttaaagtcgcactgactgaactggcactg
ggccgtgtggtatcagaagatatcctcaagccaggtacagatgaagtgttgatccctcgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactctgttgaccaaatc
aaagtacgttcagtggtaacttgtgattctgacttcggttgttgtgcgcagtgttacggt
cgtgacctagcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatagcggca
cagtcaatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagctaagaacaacggttctgtgaaactg
cacaatgcgaagttcgtaaccaataaagatggcaagctcgttatcacctctcgtgcttct
gagctgaccatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaagccgatggtgatgcagtggctgcgggcgaaaccgtagcgaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgcgtacagtttgtggatatg
atcgatggcgtaaccgtttctcgtcaaacggacgatctgactggtctgtcttcaagtgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagatatgcgtccagccattaaactg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgacatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggtgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtaccgtatcgttcggtaaagagactaaaggtaagcgtcgtttgatcatcactcgtgac
agcggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacatcctg
cgtctgcgtgggatccatgcagtgaccacttacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacagttgag
tactcacaagtgaagatcgcgaaccgtaaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagttgttgggtattaccaaagcatctctggcgactgagtctttcatctca
gcagcatcgttccaagaaaccactcgcgttctaacggaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtgatcgttggccgtctgatcccggctggtaca
ggttttgcgtaccaccaagatcgtcaagccaaacgtgcacaagaacagcaaggtccatcg
gctgaacaagccactgacaacctcgctgcactgttgaatgcaggtttctcttctgacgac
gagtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)

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