KEGG   Vibrio cholerae MJ-1236: VCD_001395Help
Entry
VCD_001395        CDS       T00903                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vcj  Vibrio cholerae MJ-1236
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:vcj00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    VCD_001395
Enzymes [BR:vcj01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     VCD_001395
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     VCD_001395
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
1:complement(410812..411621)
Genome map
AA seq 269 aa AA seqDB search
MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQLEGQTILAIHRRAKYLI
IETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWCAPD
ESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMDNAAVVGVGNIYANESLFTSR
LHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQVYGKA
KQPCPHCGEPLCEQKIAQRNTFFCPQCQH
NT seq 810 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattacctgaagttgaagtcagccgtttagggatctccccacatttggtcggt
ggcaccattcaatccttagtgttacgtacgcccaagttgcgctggcctatccctcaagag
ctgaaacagcttgaagggcagaccattctcgcgattcatcgtcgagccaagtatctgatt
attgaaaccgccgtcggcagtgcgattgtgcatttgggtatgtctggctcgctgcgtatt
ttggatggcgattttcctgccgcgaaacacgatcatgtggatctggtgatgaccagcggc
aaacggctgcgctataacgatccgcgtcgcttcggggcttggttatggtgtgcgcctgat
gagagccatgaagtgctcgggcgtttggggcctgagccgttgaccgaagcttttaacgct
gaatatatgatggacaaagcgcgcaacaaacgcattgcagtcaaagcttttatcatggac
aacgcagcggtcgtgggtgtggggaatatctatgctaatgaatcgctgtttacatcacgc
ctccatccactacgccccgctcattcgctgagcttagaggagtggcaaaccttagtggcg
aacatcaaacaagtgctgcaagtggcgattaagcaaggcggcaccacactgaaagatttt
acccaaagcgatggtaagccgggctatttcgcgcaagagctgcaagtgtatggcaaagcc
aaacagccttgcccccattgtggagagccgctttgcgagcagaaaattgctcagcgcaat
acctttttctgcccgcagtgccagcattga

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