KEGG T01871: VCLMA

Vibrio cholerae LMA3984-4: VCLMA_A1338

Entry

VCLMA_A1338 CDS T01871

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vcl Vibrio cholerae LMA3984-4

Pathway

vcl03410	Base excision repair
vcl03420	Nucleotide excision repair
vcl03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vcl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vcl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vcl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

384424614

NCBI-GeneID:

12268793

UniProt:

F2IRX2

Position

I:complement(1532015..1532863)

AA seq 282 aa
MLIRLTLTAAAIMLAQQTLANDGPLAFIPITYANNYQHGIDIFDYWKSEKLDGIRAIWTG
KQLVTRNGNPIAAPAWFTESLPSYSLEGELWAGRGNFSLVQQTVLDSQPAESAWRKISLM
LFDMPDAAGDYSKRYYNLIHLVNSLDLKHIRYVEHTPIKSEAELLSYLDHISEKSGEGVM
LRKISARYQAGRSNDLLKLKRHQDAEATVIGYRLGMGKYKGKMGSMLVRTEDGLEFYIGS
GFSDVERADPPKIGSVITYRYNGLTTEGKPRFARFVRVRENY

NT seq 849 nt +upstreamnt +downstreamnt
atgctgatacgactgacgctcaccgctgccgcgatcatgctggcccagcaaacgctggcc
aatgacgggccgctggcttttattccaattacttacgccaacaactaccaacacggcatt
gatattttcgattactggaaaagtgagaagcttgacggtatccgcgcgatttggacgggg
aaacaactggtcactcgtaacggtaaccctattgctgcccccgcttggtttaccgagtcg
ttaccctcttattcactcgaaggtgaattgtgggcagggcgcggcaatttctcactggta
cagcaaacggttttagatagccaaccggctgagtccgcatggcgcaaaatcagcttaatg
ttgttcgatatgcctgatgcggcgggcgattacagtaagcgctattacaacctcatccat
ttggtgaacagcctggatctcaagcatatccgatatgtcgaacacaccccgataaaatct
gaggcggaactgctttcctaccttgatcacatcagtgagaaatcgggggaaggggtaatg
ctgcgcaaaatcagcgctcgctatcaggcagggcgaagtaatgatttgttgaagctgaaa
aggcatcaggatgcagaagcaaccgtgattggttatcggctcggcatgggaaaatacaaa
ggtaaaatgggctctatgctggtgcggaccgaggacgggctggaattttatattggcagt
ggatttagtgatgtcgagcgcgccgatccgcccaagattggtagtgttatcacctaccgt
tacaatggacttacaacggaaggcaaaccaaggtttgcccgttttgttcgggtcagagaa
aactattga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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