KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_100603
Entry
VOLCADRAFT_100603 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_100603
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_100603
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VOLCADRAFT_100603
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   Step II factors
    VOLCADRAFT_100603
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DEAD AAA_22 HA2_C AAA_30 Flavi_DEAD AAA_19 nSTAND3 AAA_7 SLFN-g3_helicase Microtub_bd AAA_16 SRP54 ATPase T2SSE ABC_tran AAA_24 NB-ARC AAA_33
Other DBs
NCBI-GeneID: 9626096
NCBI-ProteinID: XP_002959203
JGI: 100603
UniProt: D8UKL4
Position
Unknown
AA seq 1471 aa
MDPPTDEAGGLLVRPERPLFKAPPPRTSVLGLDKLAAQKRVELAEREGMLWPPGCGSGLP
GSGDAGSGRPGPGGSDRIRGTCPGQQLVEVPLRSPERVGEPAVLVLVLVLVLKRVKLSYD
EDTGATINPSAAGGDGGGSGGGLPPPRERRFRGQRSETPSHPGGTARRCGTSPARTASNS
SGGGVSSFVLNSRAEQRERHRARERASGLYVSTAQQQNSTAPTTAAEVPVAGGGGGGGGD
REDLQRSDARFHEQMERYRRDRGGYGGDRDRGGGGGGSSGEDRGRGRDGYGGSSSSRDRD
RDSDRYGDRYGGRDRERARDGGGGGGGSTRGRDREYDDRGGRDRDGGDRRYGSSSGGGDR
ASRPGGASGFRRSEWDSSTPVRRDGGGDDEWALTPVVPSGRAGATSGLAGSSRPGALRSS
HASGGGGGWAGGGDTPLPAAAVPAGAAAAAAAGPSSGRTAGAGGGGGGGGGPSFGRVQFD
TAPSPALTPSWKSASWNRGSAAAAAGGGGGGSGGGRQALCIYGLIVIVRCEGASGDSFDE
VYVRERELEERQLERDWYDAEEFGGGTDEQGAAARFMGDEALFQRRTLDLQRRVRKDGST
MSLAATRRANELDKALNAWEENRLITSGVVRLKEAPSCTARTSVSLNFTDEDEARVVLLV
HDTKPPFLAGKVVNNKQADIVLPLKDPTSDMAVIARKGSGLVKQVREKKDQHKSRQRFWE
IAGSKMAAITGLTSEEAAAAEEAAARRAEEDQQAEGDYKAASQFKTHMKKSQAASEFSRS
KTIEQQRRSLPVYTVRDDLLQVIRENQVVVVVGETGSGKTTQMTQYLREEGYTKYGIIGC
TQPRRVAAMSVAKRVSEEMGVELGAEVGYSIRFEDCTSDKTLIKYMTDGVLLRETLMNED
IDNYSVVVMDEAHERSLNTDVLFGILKRVVGRRRDFKLIVTSATLDARKFSDFFGSVPIF
TIPGRTFPVDILWSRTVQEDYVEAAVKQAITIHLRDGPGDILIFMTGQEEIEATCFSLAE
RLEHMRSNGSEIPELLILPIYSQLPADLQAKIFDKAAEGVRKCIVSTNIAETSLTVDGIL
YVIDTGYVKMKVYNPKMGMDALQVFPISQAAAGQRAGRAGRTGPGTCYRLYTESAFRHEM
LAMNVPEIQRTNLANVVLLLKSLKVHDLLEFGFMDPPPRDNIVNSMYNLWVLGALDNTGK
EYGTEGGKLLPPPRQVLTIVSMLSVPPVFFRPPDRAEESDAAREKFFVPESDHLTLLHVY
NQWKNNGYRGDWCERHFLQAKGLRKAKEVRQQLADIMTQSGIAVTSAGSDWDIVRKAICS
AYFQNAAKFKSVGEYVNCRTGMPCHLHPSSALYGLGYTPDYIVYHELVFTTKEYMQCVTA
VEPEWLAELGPMFFSVKEVGGSLLESKQKQRADKQAMEAEMAAAQKKKEEEEAALKARLD
AQRSRERDSIVTPGLASGAGAGGGGGGAATE
NT seq 4416 nt   +upstreamnt  +downstreamnt
atggacccgccgactgacgaggcgggtgggctgctcgtccggcccgagcgcccgctcttc
aaggctccccctccgaggacctccgtcctcggtctggacaagctagctgcccagaagagg
gtggaactggcggagcgggaagggatgttgtggccaccagggtgtgggtcgggactcccg
gggagcggtgatgcgggtagcggtcgtcctgggcctggggggtcggaccgcatacggggt
acgtgtcctggccaacagctggtggaggtcccactccggagccccgagcgggttggggag
cctgcggtgctggtgctggtgctggtgctggtgctcaagcgcgtcaagctgtcgtacgat
gaggacaccggcgcgacgatcaacccgtcagcggccggaggcgacggcggcggtagcggt
ggcggcctgccgcctccccgtgagaggcgcttccggggacagcgctccgaaaccccttcc
catccgggtggtaccgcgaggaggtgcggtacctctcccgcccgcactgccagtaatagt
agtggaggcggtgtgagttccttcgttctgaattcccgggccgaacagcgggagagacat
agggcccgggagagagcgtcaggactatacgtctccacagcacaacagcaaaacagtacg
gcgcccaccacggcagcggaagtaccagtcgctggcggtggaggcgggggcggaggcgac
agggaggatctgcagcggtctgacgcaaggttccatgaacagatggagcgataccgccga
gaccggggggggtacgggggggaccgggataggggaggcggcggcggcggcagtagcggg
gaggatcggggccgggggcgagacgggtacggcggtagcagcagtagcagagatcgagat
agggatagcgaccggtacggcgatcggtacggcggtcgggatagggagcgtgcacgtgac
ggcggcggtggtggcggcggcagtaccagaggacgggatcgcgagtacgacgacaggggc
ggccgggaccgtgacggaggcgaccggcggtacggcagtagctctggcggcggcgaccgg
gcatcgcggcctggcggcgccagcggcttccgtcgcagcgaatgggacagcagtacacct
gtgcgacgagatggaggcggcgacgacgagtgggcgctgacgccagtggttccgtcaggc
cgcgctggcgctacaagcgggttggccggttcctcacgcccgggcgcactccgctcctcg
cacgcaagcggggggggaggcgggtgggccggcggaggtgacacgccgctgcccgccgcg
gcagtacccgcgggtgccgccgccgccgccgccgccggcccgtcctccggccgaacagcg
ggtgctggtggcggtggcggtggcggtggcgggcccagctttggtcgtgtccagttcgac
actgcccctagcccggctctgactccctcctggaagagcgccagttggaaccgtgggtcg
gcagcagcagcagctggtggtggtggtggtggcagtggtggtggtcggcaggccttgtgt
atatatggcctcatcgtcatcgtcagatgcgagggtgccagtggtgactccttcgacgag
gtgtatgtgagggagagggagctggaggagaggcagctggagcgggactggtacgatgct
gaggagttcggtgggggcactgacgagcagggcgccgcggcgcgcttcatgggggatgaa
gccctgtttcagcgccgtactctcgaccttcaacgccgtgttcgaaaggacggcagcacc
atgtcccttgccgccacccggcgggccaatgagctggataaggccctcaacgcctgggag
gagaacaggctcatcaccagcggggtggtgcggctcaaagaggcgccatcatgcactgct
cgcacgtcggtctccctcaactttacagacgaggacgaggcgagggtggtgctgctggtg
catgacaccaagccgcccttcctggcgggcaaggtggtcaacaacaagcaggccgacatc
gtgctccctctgaaggaccccacctcggatatggcggtgatcgccaggaaggggtcaggg
ctggtgaagcaggtccgagagaagaaggaccagcataagagccggcagcggttctgggag
atagcaggttccaagatggctgccattaccgggctgacttcagaggaggcggccgcggct
gaggaggccgcggccaggagggcggaggaggaccagcaggcggagggcgactacaaggcg
gccagccaattcaagacccacatgaagaagagtcaggccgcgagcgagttcagtcggagc
aaaaccatcgaacagcagcgcagatcactgcccgtgtacactgtacgggatgacctgctg
caggttattcgcgagaaccaggttgttgttgtggtcggcgagaccggcagcggcaagacg
acccagatgacccagtacctgagagaggaagggtacaccaagtacggcatcataggttgc
actcagccccgccgtgtcgcggccatgtcggtggctaaacgtgtcagtgaggagatgggg
gtggagctgggggccgaggtgggttactccattcgcttcgaggactgcaccagtgataag
accctcatcaagtacatgacggacggggtgctgctcagagagacactgatgaacgaggac
attgacaactacagtgtggtggttatggatgaggcgcacgagaggtcgctcaatacggat
gtactgtttggtatcctgaagagggttgtgggcaggagacgagacttcaagctgatcgtc
accagcgcaaccctggacgccaggaagttctcagacttcttcggatcagtgccgatattc
acaatcccgggtcgtaccttccccgttgacattctctggagtcgtacagttcaggaagat
tacgtggaggcggccgtgaagcaggccatcactattcacctgcgggatggtccgggggac
atcctcatcttcatgacgggtcaggaggagatcgaggccacgtgtttcagtttggctgag
cggttggagcacatgcgcagtaacggcagtgagattcccgagctgctcattctgcccatc
tacagccagctgcctgctgatctgcaggccaagatcttcgacaaggccgcggagggggtt
cgcaagtgcatcgtctccaccaacatcgcagagacgagcctcacggtggatggcatcctg
tacgtcatcgatacaggatacgtcaagatgaaggtctacaaccccaagatgggcatggac
gcactgcaagtgtttcccatcagtcaggcggctgcggggcagagggcgggcagggcgggc
aggacggggccggggacctgctaccgcctctacacggaaagcgcgttcaggcacgagatg
ttggccatgaatgttccggaaattcaacggaccaacctggccaatgtcgtactgctgctc
aagagccttaaggtgcacgacctgctcgagttcgggttcatggaccccccaccccgggac
aacattgtcaactccatgtacaacctgtgggttctgggggcgctggataacaccgggaaa
gagtacggaactgagggagggaagctccttccccccccccgtcaggtcctcaccatcgtg
tccatgttgtcggtgccgcccgtgttcttccggccccccgaccgggccgaggagagcgac
gcggcccgggagaagttcttcgtaccggagtccgaccacctcacactgctgcacgtgtac
aaccagtggaagaataacggctacaggggcgactggtgtgagcggcacttcctgcaagcc
aagggcctcaggaaggccaaggaggttcgacagcaactggcggatatcatgacgcagagc
ggtattgccgtcaccagtgcggggagcgactgggacattgtacggaaggccatttgctcc
gcctacttccagaacgcggccaagttcaagtctgtgggcgagtacgtcaactgccgtacc
ggcatgccgtgccacctgcaccccagttccgcgctgtacggcctaggttacacccctgac
tatatagtgtatcacgagctggtgttcaccaccaaggagtacatgcagtgtgttacggcg
gtggagccggagtggttggccgagctggggcccatgttctttagcgtcaaggaggtgggt
ggcagtctgttggagtccaagcagaagcagagggcggacaaacaggccatggaggcggag
atggcggccgcgcagaagaagaaggaggaggaggaggccgcgctcaaggcccgcctagat
gcccaacgcagccgggagcgggactccatcgtcacccctgggctggcgagcggggctggg
gcgggtggtgggggtgggggtgcagctacagagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (98)   
   KEGG ORTHOLOGY (1)   
   RefGene (92)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (126)   

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