KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_108284
Entry
VOLCADRAFT_108284 CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K14809  ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
Organism
vcn  Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vcn03009]
    VOLCADRAFT_108284
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VOLCADRAFT_108284
Ribosome biogenesis [BR:vcn03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    VOLCADRAFT_108284
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 2OG-FeII_Oxy_3 DnaJ
Other DBs
NCBI-GeneID: 9628188
NCBI-ProteinID: XP_002958747
JGI: 108284
UniProt: D8UJA2
Position
Unknown
AA seq 1517 aa
MPAALEDLRRRLAAKEATVRAKQYDQAARQAAELSKKCLPSPFLQAAQRAEAEQRRAQLS
RGLAALAEASSVAGGGEQGAATAGGGAGSGSGSGPSTRLAGPEDVRRVLRAASDYEVLQL
PVGSTAAEVRRAYRRLAACLHPDKCREEGAQEAFIRAAAAYNGLLRRCGGDRSAIATNIS
TRNLIHQLDLVSVAPQQKAIRKPDTPDQCGGLPRKVCSGKTLAFVLPVIERLRRLEEALK
THQVGAIIISPTRELAKQIYGVAGPLIASVPGLTSMLLVGGTDPAQDVAAFKSRGAHVLV
GTPGRIDDIVKRCTAMDLKRLEVLVLDEADRLLDLGFRAQLDSVMSRLPRQRRTGLFSAT
QTEAVQELARAGLRNPVLVNVAVTAVAAAAAAAAPQGAAGSGKKAKVGAAGGEVEGLEEA
AAAGGGDGAVGLQKTPNSLSIQYVMCEADEKIPQLVRFLRLYGTNCKIIVYAMTCAVVDY
LSLVLPRLPALRRVKMRALHGRMKQAARERELEAFRQLSAGALLATDLAARGLDIPDVHW
VVQLDPPQDPAAFVHRVGRTARMGRQGSALAYLQPHEEPYLEFLRLRKIPITETSQLPPT
SGRGEGGPQAAAASDPPRPEEQPHGHRNKKRKGQQQGQQQGAHVEEGKGGAGADRGEGRS
LVKGGVGNGNATSGGSPNGRLVGEGSATATATDGGGGGDGVGDVVSWLRGAAEREREVME
GATRAFVTYVRAYKEHQCKFIFRLQDLNVGRLARGLGLLRLPKMPDVKKPLGLEHFTPSQ
VDPMTVPYKDKPREKQRLKAIEQRRAAAGAGGAPGGRGSGAAAKRKAPGGPDAGGSECRL
PAAKRRQLQLIDEATNLNQEYSLLKKLKKGKITEHQYDVATGLSSDSDAEEEAAAAAGGA
GKGRGGDEGGAGEGARENGIAGSPDSSDSDSDRDSSGGGGGGGDARGTGGRGPQAARNGG
GGGGGGRASAVAFRRRARSVRGGAVSGGKGLGRGAGGPGHNGAIRRSTSRPLPAANAPTA
EPSTNPSPPLPPPPALLLLRLLPTTDSGYGCRVQAGRQAGGPPKGLLQLGPPRLLAQELL
QYGLRIDDINLTRALRRYRETSAAAATAAAGSGGGGSGSSNGGTGDEAAASGELLLPPPS
AAGPGALATASPPDGRTQLLLLGSVQLVDAGEGQGVGAAGGSVGPYLIMKPAGRRRLREP
QQEREVEGGGAVCGTVREADELWLTWRMEVAGVDKGGEVVKKIAVPGELSHLFRPGQRGW
GVQGLLSASELDALLGCSRLRRIRPVSECEVMLASISPRVVLVDDFLPACLCDALRAVAE
PRLIRSRVSTGAETPSRVSHSTFFTGDSARLAEVVAVEALIQQLLERTEVTGGGRPTLVK
SEALQVVSYDVGGFYSEHYDNKAGGVISRAATVIIYLEDTPQGGATFFPKSTGLPSLDSL
SRAMPALDAIPQLTYQLHAMRVARPGLRIYPAKGRAVIFWSRLVDGSEDLASLHAAEPVR
AGSKWICTRWFKELAAT
NT seq 4554 nt   +upstreamnt  +downstreamnt
atgccggcggctttggaggatttgcggcggcggctggcagccaaggaggcgacggtgagg
gccaagcagtacgaccaggcagcgcgacaggcagcagagctctcaaagaagtgtctccct
tccccgtttctgcaggcagctcaacgggcggaggcagagcagcgcagggcgcagctaagc
cgggggttggcggcgctggcggaggcgtcatcggttgcggggggaggggagcagggggcc
gcgacggcgggggggggggctggatccggatccgggtcgggcccatccacgcggctggct
ggccccgaagatgttcggcgggtgctgagggctgcatcggattacgaggtgctgcagctg
ccggtgggcagcactgcagctgaggtccgccgcgcctaccgccgcctggcggcctgtctg
cacccggacaagtgccgcgaggagggagcccaggaggcgttcatccgggcagcggccgca
tacaacgggctgctgcgccgctgcgggggagacaggtcagccatcgccaccaacatcagc
acgcgaaacttaatccatcaactagacctcgtctccgtagcacctcaacaaaaagcaatc
cgtaaacctgatactcccgaccaatgtgggggtctgcccaggaaagtatgttctggaaag
acgctggcgttcgtgctgccagttatcgaacggctcagaagactggaggaggccttgaaa
acacaccaggttggggcaatcattatatcgccaactcgagagctcgcgaagcagatttat
ggcgttgcggggccattaattgcgagcgtgcccggccttacatcaatgctgctggtcgga
ggaacggaccccgctcaggacgtggcggccttcaagtcccgcggtgcgcacgtgctggtc
ggcaccccggggcgcatagatgacatcgtcaagcgatgcaccgccatggacctaaagcgc
ctggaggtcctggttcttgacgaggccgaccggctactggacctgggcttccgcgcccag
ctggactcggtgatgtcccgactgccccggcagcgcaggaccggactgttctcggccacg
cagacggaggcggtgcaagagctggccagagcggggctccggaaccccgtcctggtgaat
gtggcggtcacagcagtagcagcagcagcggcagcggcggcaccgcagggggcggccggt
agcggtaaaaaggcgaaggtgggggcggccggtggggaggttgaggggctggaggaggcg
gcggcggctggtggtggtgacggcgcggtcgggctgcagaagacgcccaacagtctgagc
atccaatacgtcatgtgtgaggcagatgagaagattccgcaactggtccggttcctccgg
ctgtacggcactaattgtaagattatcgtgtacgccatgacgtgtgcggtcgtggactac
ttgtctctggtgctgcctcgcctgcccgcgctgcggagagtgaagatgcgggcgctgcac
ggccgcatgaagcaggcggcgagggagagggagctggaggcattccggcagctgtcggca
ggtgctctgctggccaccgacctggcggccaggggtttggatatccccgacgtacactgg
gtcgtacagctggatccaccccaggatccagccgcgttcgtacaccgagtgggtcgtaca
gcccgcatgggtcgccaggggagtgcactcgcgtacctgcagccgcacgaggagccctac
ctggagttcctccggctgaggaagatccccatcacggagacaagccagctgcccccgaca
tcgggtcggggggagggcggcccccaggcagcggccgccagcgaccccccccggcccgag
gaacaaccccacggacacagaaacaagaagaggaaggggcagcagcaggggcagcagcag
ggggcgcatgttgaggagggaaaggggggcgcgggtgcggaccggggtgagggccggagc
ctagtaaagggcggggtggggaacggcaacgccacgtccggcggcagcccgaacgggcga
cttgttggggagggcagtgctactgctactgctactgatggtggtggtggtggtgatggt
gtgggggacgtggtttcctggctccgcggggcggcagagcgggagcgggaggtgatggag
ggcgccactcgggcctttgtgacatacgtgcgggcgtacaaggagcaccagtgcaagttc
attttcagattgcaggatctgaacgtgggtcgtctagcccgggggctggggctgctgcgg
ctgcccaaaatgcccgacgtgaagaagcccctggggctggagcacttcacaccgtcgcaa
gtggatccaatgacagtgccgtacaaggataagccccgggagaagcaacggctcaaggcc
atagagcagcggcgagccgcagcgggcgcgggaggtgccccggggggtcgggggagcggc
gcggcggccaaacgtaaggcccccgggggcccggacgccgggggttccgagtgccgccta
cccgcggccaagcggcggcagctgcagctcattgacgaggcgaccaacttgaaccaggag
tacagtcttcttaagaagctcaagaagggcaaaatcactgagcaccagtacgacgtggcg
acgggactgtcctcggactcggacgcggaggaggaggcggcggcggcggcgggtggcgcc
gggaagggccggggaggcgatgagggcggggcgggggagggggcgagggaaaacggtatt
gctggaagtcccgacagcagcgacagcgacagcgacagggacagctccggaggtggtggt
ggtggtggagatgccagggggacggggggacggggaccgcaagctgcccgaaatggcggt
ggtggtggcggtggagggcgggcgtctgcagtggcgttccgtcgcagagcccggtcggtc
cgtggcggcgccgttagcggggggaagggtttggggcggggggcggggggtccgggacac
aacggggcaatccgccgaagcaccagccggcccctcccagctgccaacgccccaactgcc
gaaccatcgaccaacccgtcaccaccacttccaccaccgccggcattgctgctgctgcgg
ctgctccctacgaccgactcggggtacggctgccgggtccaggctggcaggcaggcaggc
gggcccccaaaaggtctcctacagctgggccccccgcggcttcttgcccaggaactcctg
cagtacggtctgcggattgatgacatcaacctgacccgggctttgaggcgatatcgagag
accagtgccgcagcggctactgccgccgccggcagcggcggcggcggaagcggcagtagc
aacggcggtacgggcgacgaggccgcagcctccggggagttgctactgccacctccctcg
gctgccggccccggcgctttagctacagcctcacctcctgatggccgtacgcagctgcta
ctgctgggctccgtacagctcgtggatgccggggagggtcaaggagtgggtgcggcaggc
ggctctgttgggccctatttgatcatgaagccagccgggaggaggaggctgagggagccc
cagcaggaaagggaggtggagggggggggagcagtgtgcggcactgtacgggaagctgac
gagctgtggctgacgtggcggatggaggtggcgggagtggacaaggggggcgaggtggtc
aagaagattgccgtaccgggggagctgtcccacctgtttcgcccaggccagcgggggtgg
ggggtgcaggggttgctgtccgcctcggagctcgacgcgctactgggctgcagccggctg
cggcgcattcggccggtttcggagtgcgaggtgatgctggccagtattagcccccgtgtt
gtgctggtggatgacttcctgcccgcatgtttgtgcgacgcgctgagggcggtggcggaa
ccaagactcattcgcagcagagtgtcgacgggagctgagacccccagccgcgtgagtcac
tccacgttcttcacgggtgactcagcccggctcgcggaggtggtggcggtggaggcgctc
atccagcagctactggagcgcaccgaggtgacggggggcggcagacccacgctggtgaag
agcgaggcgctgcaggtggtgagttacgacgtgggcgggttctacagcgagcactacgac
aacaaggcgggcggggtcatcagccgggccgccaccgtcatcatatacctggaggacacg
ccgcaggggggcgccacgttctttcccaagtcgacggggctgccctccctggatagcctc
tcccgcgccatgcccgccctggacgccattccgcagctcacgtaccagctgcacgcaatg
cgagtggcgcggccggggctccgcatataccccgccaagggccgcgcggtcatcttctgg
tctcgactggtggacggctccgaggacctggcgtctctgcacgccgcagagcccgttcgc
gcgggcagcaagtggatttgcacccgctggttcaaggagttggcggccacctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (141)   
   KEGG ORTHOLOGY (1)   
   RefGene (135)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (153)   

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