KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_92540
Entry
VOLCADRAFT_92540  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VOLCADRAFT_92540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_92540
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VOLCADRAFT_92540
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     VOLCADRAFT_92540
SSDB
Motif
Pfam: Not3 NOT2_3_5_C Tnp_22_trimer PMEI Hemagglutinin Syntaxin-6_N
Other DBs
NCBI-GeneID: 9615985
NCBI-ProteinID: XP_002951901
JGI: 92540
UniProt: D8TZX7
Position
Unknown
AA seq 899 aa
MPQYSAHKQAHDQENQNQREKLEGELKKEIKKLQRLREQIKGWIAGADIKDKQPLIDARK
SIERDMERFKACEMEAKAKGSAAGGADRDSTQRAKDEARDWIKTVVDQLTEKVESMEAEM
EELQVTVKKRQKPPVRLTSLEETVGRHKDHIDRLEKVLRCIDNETIQPDELSDLKEEMDL
YLLTTDDTVWGAGVRCGLGRRETGGEGGWVGAEATGDEAPLTTSQTGILCAQNTEDGEDM
GMDLSNVDDMYGMFQDRLDAVDNAAPAAPLHSVKHGKGGREKEAEEAREKERERERAAAA
AAKAQLIAQAGGLFFFRIWYVRVVWWCVRQGNTNLKLHDEDEVRKPLANASSVGAGPGNG
VSVSGGSVGAAAGGKPSTPVAAPPATTTAAAGPGLPLAVPPLAAPQPSVGPSGSRQTAPS
TPAKEPDSGTATPRTATMAPSTASPGLSSSEAASPMPPGGGAVGTPHAAGPVLGPMSLGA
HGQPPPPPPPPPPPGMALAGGGPARTPTSGGPTANGGGGGAGGMDGGGGVPRWLAAAASG
GPAGGSQGSEAPHSIRDLSSTQNGAGPGPRQGPASASSAAAAAATAGGGGGGGGFAATGP
GTAGTPSGTADGGGGGGPLASSAAAAAAGRQPTDRGPAAGPSGPSGMTDALTARMAGVVL
GGSGAANANVNASSAGAGPGSRASSAGGMGLSPQSAAAAAAASSAGSAGGGGGLLLPGDL
PPVVPAYSVSAAKQILEACYARGVIPHLSDTEWKHTRPRHPVAVPASYPKTAPEVVDNPA
LFRKMDPECLFFAFYFQPNTYQQFLAAHELKRQSWRFHRHHNAWFQRFTEPAVTSEEYEQ
GAYVYFDYNIVHDDMQTGWCYRRKENFTFRYDALEDELRVANLTPQQTVAMAMAQVQGL
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgccgcagtactcggctcacaagcaagcgcacgaccaagaaaaccagaatcagcgggag
aagcttgaaggagagcttaagaaggagattaagaagctgcagcggttgcgagagcagata
aagggatggatcgctggagcggatatcaaggacaagcagccgttgatcgatgcacgcaag
tctatagagcgcgatatggagcgtttcaaggcttgcgaaatggaggccaaagcgaagggc
agcgcagcagggggagccgaccgtgattctacgcagcgcgcaaaggacgaggcgcgggac
tggattaagacggtcgtggatcagcttactgagaaggtggagtccatggaagcggaaatg
gaggagctgcaggtgaccgttaagaagcgtcagaaaccccccgtccggttgacctccctg
gaggagacagtgggccgccacaaggaccacatcgaccgattggagaaggtgctgcggtgt
atcgacaatgagaccatccaaccggatgagctgtcggatctgaaggaggagatggacctc
tacctgctcacaacggatgatacggtgtggggagcaggagtccgctgcggcctggggagg
agggaaacgggaggggaagggggttgggtgggtgcggaggccacaggggacgaggcccca
ctcacaacatcccaaactggaattttgtgcgcacagaacaccgaggacggcgaggacatg
gggatggacctatccaacgtggacgacatgtacggcatgttccaggaccgtttggatgca
gtggacaatgcggccccggcggcgcccctacacagcgtcaagcacggcaagggcggcagg
gagaaggaggcggaggaggcgagggagaaggaacgggaacgggagcgggctgcggcggca
gctgctaaggcgcaactcatagcgcaggcaggtggcctcttttttttccgcatatggtat
gtacgcgtggtgtggtggtgtgtacgacaggggaatacgaatttaaagcttcacgacgag
gacgaagtacggaagcccctcgccaacgccagcagcgtcggagcggggcctggcaatggc
gtcagcgtcagcggtggcagcgtcggtgccgccgccggcggcaagccctcgacacctgtg
gcggcgccgccagcgaccacgacggcagcggcggggcctggtcttcctcttgccgtaccg
ccgctggcggcgccgcagccgtcagtggggccgtcgggatcaaggcagacggcgccgtcg
acgccagcaaaggaacccgactctggtacggccacgccgcgaacagccaccatggcgcca
tcaacagcatccccggggttgtcctcttcagaagcagcctcgccgatgccgcctggcggc
ggcgccgtcgggaccccccacgccgctgggcccgtcttgggccctatgtccttgggcgcc
cacgggcagccgccgccgccgccgccgccgcctcccccgcctgggatggccctggcggga
ggggggccggcgaggacgccgacgtcagggggtccgacggcaaacggcggtggcggcggc
gccggtggcatggatggcggcggcggggtgccgcgttggctggcggcggcggcgtccggg
ggccctgcggggggatcccagggctcggaggccccgcactccatccgggacttgtcatct
acgcagaacggagcggggccggggccacggcagggtccagcgtctgcatcatcagcggcg
gcggctgcggcgaccgccggcggtggtggcggcggcggcggctttgccgccaccgggccg
gggaccgcaggaacgccgtcgggtactgctgacggcggcggcggcggcgggccgttggcg
tcgtccgccgccgcggcggcggcgggtcgtcagcccacggaccgagggcccgctgccggt
cccagcgggcccagtggcatgacggacgcactcacggcgcgaatggcaggcgtggtactg
gggggaagtggagccgccaacgccaacgtcaacgcgtcgtcggccggagccggccctggc
tcacgagccagcagtgccggcgggatgggcttgtcgccgcagtccgcggccgctgccgcc
gccgccagcagcgcaggcagcgccggcggcggcggcgggttgttgcttcccggggatctt
cccccggtagttcccgcgtattcggtgtccgctgcgaaacagatcctggaggcttgttac
gcacgcggggtgataccacacctatccgacacggaatggaaacacacacggccacggcac
cccgttgccgtacccgcgtcgtaccccaagacggcgcccgaggtggttgacaacccggcg
ctcttcaggaaaatggaccccgagtgcctgttcttcgccttctacttccagcccaataca
taccagcagtttctggcggcacacgagctcaagcggcagtcctggcgcttccaccgccac
cacaacgcctggttccaaagattcacggagccagccgtgacttcggaggagtacgagcag
ggggcctacgtgtactttgactacaatattgtgcacgatgacatgcagaccggttggtgc
tatcggcgcaaagagaacttcacgtttcggtacgacgctctggaggacgagttgcgtgtt
gccaacctgacgccgcagcagacggttgcgatggcgatggcgcaggtgcaggggctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (90)   

Download RDF
DBGET integrated database retrieval system