KEGG   Vibrio cholerae O1 El Tor MS6: MS6_2286
Entry
MS6_2286          CDS       T03666                                 
Name
(GenBank) ATP-dependent 23S rRNA helicase DbpA
  KO
K05591  ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
Organism
vcs  Vibrio cholerae O1 El Tor MS6
Brite
KEGG Orthology (KO) [BR:vcs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vcs03009]
    MS6_2286
Enzymes [BR:vcs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     MS6_2286
Ribosome biogenesis [BR:vcs03009]
 Prokaryotic type
  rRNA helicases
   MS6_2286
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_30 Helicase_C_2 AAA_19 PRAI CMS1 AAA_22 DUF1529
Other DBs
NCBI-ProteinID: BAP03941
Position
1:complement(2606316..2607698)
AA seq 460 aa
MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL
GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ
TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH
HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT
DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE
YMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK
INLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK
NT seq 1383 nt   +upstreamnt  +downstreamnt
ttgaacgccaactcttttgctgctttgaatctgaagcctgaacttcttgctaaccttgaa
accatggggtttgccactatgactccgattcaggcgcaatctcttcctgcgatccttaaa
ggtcaggatgtgattggccaaggcaaaacaggctccggtaaaaccgctgcgtttggtctt
ggggtactctccaacctcaatgtgaagcgctttcgtgtacaagccttggtgctgtgtcca
acacgtgagttggccgatcaagtcgcgaccgatattcgtacgctagggcgtgctatccac
aatatcaaagtgttgacgctgtgtggcggcatgccgatggggccgcagatcggatccctt
gagcatggcgcgcatatcttggtcggaacgccgggacggattttggatcatttgagtaaa
gaccgtatcgatctcagtgagctcaataccttggtgttggatgaagcggatcgcatgctc
gaaatgggcttccaagaagcgctggaggcgatcattgctgctgcgccagccgagcgtcaa
accttgctgtttagtgcaacttaccccgctagtattgagcagattgcgcaaagcgtgact
cgcaatgcgctgatgattaaagttgaggcgacccacgatacttcaagcattcgtcaatac
ttctataaagtagaaggcagtgctgcgcgtgatgaggctctggaaacgttgcttttacac
catcaaccgacttcttcggtggtgttctgtaacactaaacgtgaagtacaaaatgttgcc
gatgccctgcatcaaagcggctttagcgtgattgaactgcatggtgatatggagcagcgt
gagcgtgaccaagccttagtgcaatttgccaataagagtatttctattctggtcgcgacc
gatgttgcggctcgtggtctggatgtcgataaccttgatgcagtgtttaactacgatctg
tctcgcgatcctgaagtgcatgtacatcgcatcgggcgtactggtcgtgcgggaagtaaa
ggcttagcgtttagcttctttagtgacaacgagagctaccgtgtggcgcaaattgatgag
tacatggatattgcgattgagccttcaaccttgccgcaacctgctgcaggcgctcgtcct
tacgcggcgaatatggtcaccattcagattgacggtggtaagaaagacaaggtgcgtccc
ggtgatattcttggcgcgctaaccagtgatggtgaactgactgcggagcatatcggcaag
attaacctgttcccgatgcgtgcttatgtagccgtgcacaagaaaatcgccaccaaagca
ctgaataaaattgccaacggtaagatgaagggacgccagttccgtgctcgcttactcaaa
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (18)   

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