KEGG T03828: VAA049

Vibrio cholerae O49 1154-74: VAA049_1804

Entry

VAA049_1804       CDS       T03828

Name

(GenBank) RNA pseudouridylate synthase family protein

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

vcx Vibrio cholerae O49 1154-74

Brite

KEGG Orthology (KO) [BR:vcx00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vcx03009]
    VAA049_1804
   03016 Transfer RNA biogenesis [BR:vcx03016]
    VAA049_1804
Enzymes [BR:vcx01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     VAA049_1804
    5.4.99.29  23S rRNA pseudouridine746 synthase
     VAA049_1804
Ribosome biogenesis [BR:vcx03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    VAA049_1804
Transfer RNA biogenesis [BR:vcx03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    VAA049_1804

SSDB

Motif

Pfam:

PseudoU_synth_2 Peptidase_M32

Other DBs

NCBI-ProteinID:

AKB04812

Position

1985779..1987458

AA seq 559 aa
MSALPDCFTRFTSVITHIALPERFTYPFCYQPHPLSEIAADELQQHLLTQTDWYHPFGLT
ETDPQAHGKMFGVLVVQHSSGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDG
DQIAVINQQVREQKTDPELAELASALKQSQLQAEHELSQRRTLHSKQRHFRKQQRLQAEA
LPEKEKHTLLARLAEESVQQKRQLQCLKQECEQRIAALQHRLDHKLMRIEQLKQQRKQRS
AALQKKLFSAYRFANIRGVEKDLVELFSVTKNPLPPAGSGECAAPKLLHYAFQHQLRPIA
LAEFWWGRSPKSEIRQHKKFYPACQSKCQPILAHMLEGMTLEDNPLLSNPAQGQDITIVY
QDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFALTR
RANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQQGKPALT
HWETVQVEPNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLFLHAEQL
SFAHPYTKQPMTFQVDADF

NT seq 1680 nt +upstreamnt +downstreamnt
atgtctgcactgcccgattgcttcactcgttttacttctgtcatcacccatatcgcgcta
cccgagcgctttacttatccgttttgttatcagccacacccactgtctgaaattgcagcc
gatgagctacagcaacatttactcactcaaaccgattggtatcacccttttggtttaacg
gaaaccgacccacaagctcacggcaaaatgtttggagttctggttgtgcagcacagctct
ggaaccttgggttatttggcggcgttctcaggtcaactggctgaacaaaatcggttgccg
ggatttgttccccctgtgtttgaccgctttgctgatgcgtcttttttcagagtggatggc
gatcagattgcggtcattaaccaacaagtgcgagagcaaaaaactgatccggagcttgcg
gaactcgctagtgcccttaagcaatctcagttacaagccgagcatgagctgagccagcgg
cgtacattgcacagcaagcagcgtcactttcgaaaacagcaacgcttacaagcagaagcg
ctaccagaaaaagaaaaacacactctgttggctcgcctagcggaagaaagtgtgcaacaa
aagcgtcagttacagtgcctcaaacaagagtgtgaacagcggattgcggctttacagcat
aggttagatcataaactcatgcgcattgagcaactgaaacagcaacgtaaacagcgctct
gcggcgctgcagaaaaaactgttctccgcctatcgttttgccaatatccgtggcgttgaa
aaggatttggttgagctattttccgtgaccaaaaatccgcttccacccgcaggttcaggc
gagtgcgcggctccaaagctattacactatgcgttccaacatcagctgcgacccattgca
ttggcagagttctggtgggggcgctcccccaaatcggaaattcgtcagcataagaagttc
tatcctgcatgtcagagtaaatgccaaccgattttggcgcacatgttagaagggatgacg
ctggaagataatccactgctcagcaatccggcgcaaggtcaagacatcaccattgtgtat
caagatgacgccatcgtggtggtcaataagcctgctgaatttctctctgtccccggtgtg
catgtgcatgattctgtgttgacgcgcttaaaggctcaatttacccaagcagaaggggta
tttgccctacatcgtctcgatatgtctacttctggacttttggtgtttgcgctgacgcga
cgtgctaacaaacagttgcaaaagcagtttatttctcgtgccgtccaaaagcgctatgtc
gcacttatcgaaggaaaattaagcgaaacacaaggtgagatccagttgcctttgtgtggc
gatctggatgataggccaagacaaaaagtgtgctggcagcaaggtaagcctgcactcact
cattgggaaaccgtgcaagtggagccaaaccgaactcgtgtttacctctacccacataca
ggacgtacccatcaattgcgagtacattgcgcccatcatcttggcttaaatgcgccgatt
gtcggtgacgatttgtatggcttgcaagacaaacgtttgtttttgcatgccgaacaactg
agttttgctcatccctacactaagcagcccatgactttccaagtcgatgcggatttttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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